Tag Archives: NorBOL

Sled test for copepods

R.P. sled onboard R/V. H. Brattström

Happy new year to everyone! We managed to start 2021 with a day at sea, testing the R.P. sled for collecting benthic copepods from greater depths . January 27 we went out with research vessel Hans Brattström, crew and research scientist Anne Helene Tandberg who also turns out to be a true sled expert! She would join HYPCOP to teach how to process the samples from the R.P. sled on the boat.

 

 

 

 

Anne Helene Tandberg (left) joining HYPCOP (Cessa Rauch right) for teaching how to use the sled.

But first, what is an R.P. sled and why is it such an important key in the collection of copepods? The R.P. sled is an epibenthic sampler. That means that it samples the epibenthic animals – the animals that live just at the top of the (soft) seafloor – and a majority of these are often small crustaceans. The “R.P.” in the name stands for Rothlisherg and Pearcy who invented the sled. They needed to collect the juveniles of species of pandalid shrimp that live on the sea bottom floor. These animals are very small so a plankton net was necessary to collect them; a ‘normal’ dredge would not quite cut the job. They needed a plankton net that could be dragged over the bottom without damaging the net or the samples and also would not accidently sample the water column (pelagic); and so, the R.P. sled was born. This sled was able to go deeper than 150m, sample more than 500m3 at the time and open and close on command which was a novelty in comparison to the other sleds that where used in those days (1977). The sled consists of a steel sled like frame that contains a box that has attached to it a plankton net with an opening and closing device. The sled is heavy, ca. 150kg, and therefore limits the vessel sizes that can operate it; the trawl needs to be appropriately equipped including knowledgeable crew. It is pulled behind the vessel at slow speed to make sure the animals are not damaged and to make sure it does not become too full of sediment that is whirled up.

 

 

Sieved animals from the decanting process

So off we went with r/v Hans Brattström pulling the heavy gear at ca. 700m depth with 1 knot and a bottom time of 10 minutes sampling the Krossfjorden close to Bergen. It was a beautiful day for it with plenty of sun and calm seas. The crew handled most of the sled, leaving sorting the samples up to HYPCOP under the guidance of Anne Helene. Which is not as straight forward as it may sound! The process of filtering the samples after collecting them from the sled is done by decanting, which you can see in this movie from an this blog (in Norwegian) from earlier.

Decanting set-up for R.P. sled samples

Decanting means separating the mixture of the animal soup from the liquid by washing them in a big bucket, throw the liquid through a filter and collect the animals.

Sieved animals from the decanting process

This all needs to be done with care as the animals are often very small and fragile. After collecting, the most time-efficient and best preservation for the samples is to fixate them immediately with ethanol, so they don’t go bad while traveling back to the museum.

Fixating collected animals with technical ethanol

For collecting copepods we use a variety of methods; from snorkeling, to scoping up water and plankton nets, but for greater depths and great quality benthic samples the R.P. sled will be the most important method. We thank Anne Helene for her wisdom and enthusiasm that day for showing HYPCOP how to work with such interesting sampling method

 

We got some nice samples that will be sequenced very soon so we can label them appropriately. Although this first fieldwork trip off the year was mainly a teaching opportunity, we still managed to sample two stations with plenty of copepods and lots of other nice epibenthic crustacea, and Anne Helene is especially happy with all the amphipods she collected during the day. So for both of the scientists aboard this was a wonderful day – sunshine and lovely samples to bring back to the lab!

Some fresh copepods caught with the R.P. sled

– Cessa & Anne Helene

Follow HYPCOP @planetcopepod Instagram, for pretty copepod pictures https://www.instagram.com/planetcopepod/

Twitter, for copepod science news https://twitter.com/planetcopepod

Facebook, for copepod discussions https://www.facebook.com/groups/planetcopepod

See you there!

The amphipods around Iceland – fresh special issue

IceAGE stations with amphipods. Red stations are analysed in the special issue. Fig 1 from Brix et al 2018

As the IceAGE-project presents their amphipod results in a special issue of ZooKeys, the invertebrate collections are represented with co-authors in 4 of the 6 papers. All papers in the special issue are of course Open Access.

Endre, Anne Helene and IceAGE-collaborators Anne-Nina and Amy have examined the Rhachotropis species (family Eusiroidea) from Norwegian and Icelandic waters, using material both from NorAmph and IceAGE. We see possible cryptic species, and we described to separate populations (and Arctic and one North Atlantic) of Rhachotropis aculeata.

Rhachotropis aff. palporum from IceAGE material. Fig 4G in Lörz et al, photographer: AHS Tandberg

Anne Helene has worked with Wim Vader from Tromsø Museum on Amphilochidae. The new species Amphilochus anoculus is formally described, and amphipod identifiers working with North-Atlantic material will be happy fo find a key to all Amphilochidae in the area. These minute and fragile animals are often lumped as family only, but the times for that are now over…

Key to the Amphilochidae from North Atlantic waters. Fig 14 from Tandberg & Vader 2018

Neighbour Joining tree of COI-sequences from IceAGE. The coloured lines on the side show possible interesting regions for further studies. Fig. 2 from Jazdzewska et al 2018

A paper on DNA fingerprinting of Icelandic amphipods is presented by Ania (who visited us two years ago to work on Phoxocephalid amphipods) and 10 coauthors. This study gives a very nice material to compare with the NorAmph barcodes, and some of the interesting results are discussed in the two first papers.

A summary-paper on the amphipod-families around Iceland (Brix et al) gives an overview of both biogeography and ecology of the amphipods in this area. This paper also presents faunistic data on Amphilochidae from the earlier BioIce project, where researchers from Bergen, Trondheim and Reykjavik sampled Icelandic waters.

Anne Helene

 

 

Literature:

Brix S, Lörz A-N, Jazdzweska AM, Hughes LE, Tandberg AHS, Pabis K, Stransky B, Krapp-Schickel T, Sorbe JC, Hendrycks E, Vader W, Frutos I, Horton T, Jazdzewski K, Peart R, Beermann J, Coleman CO, Buhl-Mortensen L, Corbari L, Havermans C, Tato R, Campean AJ (2018) Amphipod family distributions around Iceland. ZooKeys 731: 1-53 doi:10.3897/zookeys.731.19854

Jazszewska AM, Corbari L, Driskell A, Frutos I, Havermans C, Hendrycks E, Hughes L, Lörz A-N, Stransky B, Tandberg AHS, Vader W, Brix S (2018) A genetic fingerprint of Amphipoda from Icelandic waters – the baseline for further biodiversity and biogeography studies. ZooKeys 731: 55-73 doi:10.3897/zookeys.731.19913

Lörz A-N, Tandberg AHS, Willassen E, Driskell A (2018) Rhachotropis (Eusiroidea, Amphipoda) from the North East Atlantic. ZooKeys 731: 75-101 doi:10.3897/zookeys.731.19814

Tandberg AHS, Vader W (2018) On a new species of Amphilochus from deep and cold Atlantic waters, with a note on the genus Amphilochopsis (Amphipoda, Gammaridea, Amphilochidae). ZooKeys 731: 103-134 doi:10.3897/zookeys.731.19899

AmphipodThursday: IceAGE-amphipods in the Polish woods

img_2610This adventure started 26 years ago, when two Norwegian benthos researchers (Torleiv Brattegard from University of Bergen and Jon-Arne Sneli from the University in Trondheim) teamed up with three Icelandic benthos specialists (Jörundur Svavarsson and Guðmundur V. Helgasson from University of Iceland and Guðmundur Guðmundsson from the Natural History Museum of Iceland) to study the seas surrounding the volcanic home of the Nordic sages. 19 cruises and 13 years later – and not least lots of exciting scientific findings and results the BioICE program was finished.

But science never stops. New methods are developed and old methods are improved – and the samples that were stored in formalin during the BioICE project can not be used easily for any genetic studies. They are, however, very good for examinations of the morphology of the many invertebrate species that were collected, and they are still a source of much interesting science.

Participants of the IceAGE workshop. Photo: Christian Bomholt (www.instagram.com/mcb_pictures)

Participants of the IceAGE workshop. Photo: Christian Bomholt (www.instagram.com/mcb_pictures)

The dream about samples that could be DNA-barcoded (and possibly examined further with molecular methods) lead to a new project being formed – IceAGE. A large inernational collaboration of scientists organised by researchers from the University of Hamburg (and still including researchers from both the University of Iceland and the University of Bergen) have been on two cruises (2011 and 2013) so far – and there is already lots of material to look at!


This week many of the researchers connected with the IceAGE project have gathered in Spała in Poland – at a researchstation in woods that are rumoured to be inhabited by bison and beavers (we didn´t see any, but we have seen the results of the beavers work). Some of us have discussed theories and technical stuff for the papers and reports that are to come from the project, and then there are “the coolest gang” – the amphipodologists. 10 scientists of this special “species” have gathered in two small labs in the field-station, and we have sorted and identified amphipods into the wee hours.

It is both fun and educational to work together. Everybody have their special families they like best, and little tricks to identify the difficult taxa, and so there is always somebody to ask when you don´t find out what you are looking at. Between the stories about amphipod-friends and old times we have friendly fights about who can eat the most chocolate, and we build dreams about the perfect amphipodologist holiday. Every now and then somebody will say “come look at this amazing amphipod I have under my scope now!” – we have all been treated to species we have never seen before, but maybe read about. We also have a box of those special amphipods – the “possibly a new species”- tubes. When there is a nice sample to examine, you might hear one of the amphipodologist hum a happy song, and when the sample is all amphipods but no legs or antennae (this can happen to samples stored in ethanol – they become brittle) you might hear frustrated “hrmpfing” before the chocolate is raided.

 

Isopodologists (Martina and Jörundur) visiting the amphipodologists... Photo: AH Tandberg

Isopodologists (Martina and Jörundur) visiting the amphipodologists… Photo: AH Tandberg

The samples from IceAGE are all stored in ethanol. This is done to preserve the DNA for molecular studies – studies that can give us new and exciting results to questions we have thought about for a long time, and to questions we maybe didn´t even know we needed asking. We can test if what looks like the same species really is the same species, and we can find out more about the biogeography of the different species and communities.

The geographical area covered by IceAGE borders to the geographical area covered by NorAmph and NorBOL, and it makes great sense to collaborate. This summer we will start with comparing DNA-barcodes of amphipods from the family Eusiridae from IceAGE and NorAmph. They are as good a starting-point as any, and they are beautiful (Eusirus holmii was described in the norwegian blog last summer).


Happy easter from all the amphiods and amphipodologists!

Anne Helene

Literature:

Brix S (2014) The IceAGE project – a follow up of BIOICE. Polish Polar Research 35, 1-10

Dauvin J−C, Alizier S, Weppe A, Guðmundsson G (2012) Diversity and zoogeography of Ice−
landic deep−sea Ampeliscidae (Crustacea: Amphipoda). Deep Sea Research Part I: 68: 12–23.

Svavarsson J (1994) Rannsóknir á hryggleysingjum botns umhverfis Ísland. Íslendingar og hafiđ.
Vísindafélag Íslendinga, Ráđstefnurit 4: 59–74.
Svavarsson J, Strömberg J−O,  Brattegard T (1993) The deep−sea asellote (Isopoda,
Crustacea) fauna of the Northern Seas: species composition, distributional patterns and origin. Journal of Biogeography 20: 537–555.

On the hunt for seaweeds!

The red, the green, and the brown

The red, the brown, and the green

This week the invertebrates are forced to take second place (!) as I have joined the master students participating on the course BIO309A – marine floristics out at our field station.

Lab work

Lab work

The course is the sister course to Marine faunistics that I joined in on last fall. The focus of this week is the macroalgae; the seaweeds that most people are (passingly) familiar with. (The micro algae have been covered in lectures and lab work back at BIO earlier.)

We are doing a mix of field work and lab work. Every day we go out and sample, and bring the catch back to the lab to identify it. 1-2 specimens of each species that is identified is destined to become barcode vouchers for NorBOL, and go through the by now fairly familiar route of photo-tissue sampling-preservation for inclusion in the museum collection as a voucher. Seaweeds fixate badly in ethanol, so instead we are pressing them and making herbarium specimens. So far we have about 50 vouchers (from almost as many different species), and the number is sure to climb as we continue working our way through the fresh stuff we just collected.

Collecting just outside the station

Collecting just outside the station

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Kjersti is explaining about the current habitat

Ah, such a hard day to be at sea!

Ah, such a hard day to be at sea!

Vivid!

Vivid!

Being ferried across to the island where we'll examine the tide pools

Being ferried across to the island where we’ll examine the tide pools

Nice location!

Nice location!

"that one!"

“that one!”

Kjersti is explaining the habitat

Hunting

Wave exposed!

Wave exposed!

I do "happen" to find some animals *on the lagae as well - here's a beautiful nudibranch, a Doto cf. maculata

I do “happen” to find some animals *on the algae as well – here’s a beautiful nudibranch, a Doto cf. maculata

Undercover amphipod

Undercover amphipod

Hydrozoans and two Aplysia punctata hanging out on a piece of Ascophyllum nodosum

Hydrozoans and two Aplysia punctata hanging out on a piece of Ascophyllum nodosum

Berthella sideralis, a rarity finally documented alive and barcoded!

The Pleurobranchidae sea slug species Berthella sideralis was described by the Swedish malacologist Sven Ludvig Lovén in 1846 based on specimens collect at Bohuslän, in southern Sweden not far from the city of Gothenburg. This species has hardly been mentioned in the literature after its original description, and no images of life species are to our best knowledge available in books, research papers or even web platforms – until now!

A synthesis of the morphological features of B. sideralis can be found in Cervera et al. (2010) who studied in detail two specimens collected during 1930’s in Trondheimfjord as part of a phylogenetic study of the genus Berthella.

Recently, in late November 2015 during a Museum scientific cruise – there is a blog post about this day of field work here – we collected one specimen in Hjeltefjorden (around Bergen) at 220 meters depth using an RP-sledge. This specimen is here documented and was recently genetically barcoded as part of our effort to barcode the Norwegian marine fauna through the NorBOL project.

A live specimen of Berthella sideralis. Ths scale bar i 5 mm. Photo: K. Kongshavn

A live specimen of Berthella sideralis. The scale bar i 5 mm. Photo: K. Kongshavn

Berthella sideralis is only known from Sweden and Norway. In Norway it has been reported between Bergen and Finnmark.

Reference: Cervera, J L., Gosliner, T. M., García-Gómez, J. C., & Ortea, J. A. 2010. A new species of Berthella Blainville, 1824 (Opisthobranchia, Notaspidea) from the Canary Island (Eastern Atlantic Ocean), with a re-examination of the phylogenetic relationships of the Notaspidea. Journal of Molluscan Studies, 66: 301–311.

-Manuel & Katrine

Thursday Amphipod — Norwegian Marine Amphipoda

Amphipoda is an order of mainly small crustaceans living in the ocean, in lakes and rivers, in caves and in moist soil. They can be found worldwide, and the last count in the marine speciesdatabase WoRMS gives about 9 800 valid species. Most of the amphipod species are marine, with again most species connected to the sea-floor (benthic) – even if one of the suborders entirely lives in the watercolumn (pelagic).

The Norwegian Species-name List includes 561 amphipods in Norway, and the most recent listing of amphipods in the North-East Atlantic includes 850 species (Vader, 2007). How many amphipod species that do live in Norwegian waters is probably somewhere between these two numbers.

A collection of Norwegian Amphipoda. Photo: Katrine Kongshavn

A collection of Norwegian Amphipoda. Photo: Katrine Kongshavn

The Norwegian Species Initiative funded project “Norwegian Marine Amphipoda” (NorAmph) starting these days at the Universitymuseum has as one of its objectives to produce a better overview of what species are present in Norwegian marine waters. Utilising material from large projects such as MAREANO and GeoBio, from field-cruises with UNIS and not least the wonderful wealth of the Natural History Collections of the Universitymuseum of Bergen we hope to be able to give an answer to the question.

When a new species of any animal is described, it is mostly done on the basis of its morphology (how it looks). Lately we also add information about a small and species-specific part of the DNA, but for most species this is informations we don´t have yet. The project Barcode of Life aims to map this small part of every species´ DNA  as a tool for later identification – like the barcodes that are used in shops. Norway is participating in this project through the national node NorBOL – and another of the objectives of the NorAmph project is to try to DNA-barcode as many of the norwegian marine amphipod-species as possible. You can read more about the NorBOL work at our invertebrate lab here at her museum here.

One very important part of the NorAmph project is to present the amphipods to all you not working on this fascinating group. Maybe you played with sandhoppers during a beach-holiday, or hunted for sideswimmers under the cobbles on a rocky shore? You might even have been flyfishing with a “Gammarus”-fly? Follow our “TangloppeTorsdag” (in Norwegian) or ThursdayAmphipod (in English) tag. Everything we post under this project will be collected under the category “NorAmph”.

Anne Helene

Literature:
Vader, W. 2007 A checklist of the Marine Amphipoda of the North-East Atlantic and Norwegian Arctic. Published on Tromsø Amphipod Webpage

Door #4: A cushioned star

This gorgeous sea star was first described by O.F. Müller in 1776. He gave it a species name fitting the characteristic appearance of the animal (Lat. Pulvillus= pillow, cushion). The common names in both English – Red Cushion Star- and Norwegian – Sypute – also reflect on this. Though most commonly red like the specimen pictured below, they can also be yellow-white. The white protrusions on the upper side the are gills. It lives at 10-300 meters depth, where it is often seen feeding on the coral Alcyonium digitatum. This particular specimen was collected during the course in marine faunistics this fall, in a locality just outside our field station close to Bergen.

Porania-001 ZMBN_106039_2Strangely enough, considering how common, conspicuous and wide-spread the species is, it has not been barcoded very frequently in BOLD – our specimen here will be the fifth in total to be submitted..!

Screen shot from a search in BOLD for the species

Screen shot from a search in BOLD for Porania pulvillus

-Katrine

Door #1: A day at sea

Welcome to our marine invertebrates December calendar! In Norway it is very common for children to have a Advent calendar of some sort to help shorten the wait towards Christmas.

We’ve decided to run with the idea here on the blog, giving you a tidbit about our work every day from December 1st to 24th.

We hope you’ll join us on our little venture – we can guarantee a varied selection of topics!

All the posts will be gathered under the Category 2015 December calendar

First out is a tale of sampling in the sleet…!

The scientific collections are the backbone of all the research performed at the University Museum – as it is at any museum. They hold treasures collected through the entire lifetime of a museum, and most times a collection was the reason for the establishment of a proper museum. The University Museum of Bergen is one of the oldest natural history collections in Norway, and we have grand collections.

But a collection needs to live – to be added to and to be used of – and this was the reason that bright and early Monday morning Katrine and Anne Helene were ready to go to sea. Our goal was to make a jumpstart at Anne Helenes new project about Amphipods (more about that in a later blog), and to take a grab (or two) of sandy seafloor to look for bristle worms (Polychaeta).

It is always a risk planning on a cruise in the very end of November, but this time the weather was on our side. Our plan – “go out and grab animals, sandy bottom is nice” – was cooked up in the spur of the moment  when we got an offer for boat time late Friday afternoon (someone else had to change their plans in the last minute), and maybe that was why everything went so smoothly? Going out collecting benthic animals (those that live on the seafloor) is one of our favourite things, and so we didn’t need much prodding.

The grab and sledge performed beautifully, and now is the time for sorting and photographing live animals before adding them to the collection. Be sure to follow their story through later blogs – they will show up in the categories NorAmph and NorBOL, and maybe somewhere else as well?

 Katrine and Anne Helene

Make sure to check back tomorrow to see what is behind Door #2…!

The 14th Deep-Sea Biology Symposium

  • IMG_9001

 

  • 5 days
  •  ~200 talks
  • ~240 posters
  • 35 nationalities
  • 360 enthusiastic participants
  • Immeasurable cups of coffee & lots of pastries

 

 

The 14th Deep-Sea Biology Symposium was arranged in Aveiro, Portugal between 31st of August and 4th of September, and these happy people were amongst the participants.

The Norwegian University/museum entourage came from the Biological Institute (9),                  the University Museum (4), and the NTNU University Museum (1).

AveiroDSBS2015_PT-5749

The topics of the conference was divided into seven main themes:

  1. Biodiversity and ecosystem functioning
  2. Advances in taxonomy and phylogeny
  3. Autoecology
  4. Connectivity and biogeography
  5. Evolutionary history and fossil records
  6. Natural and anthropogenic disturbance
  7. Stewardship of our deep oceans (DOSI)

(more details about the themes can be found here)

Our contributions ranged from sponges to fish, and included both talks and posters.

In no particular order (UM people in bold):

Bilder Aveiro
Talks:

Eilertsen MH, Kongsrud JA, Rapp HT – Evolutionary history of Ampharetinae (Ampharetidae, Annelida) adapted to chemosynthetic ecosystems

Hestetun JT, Vacelet J, Boury-Esnault N et al – Phylogenetic relationships of carnivorous sponges

Rees DJ, Byrkjedal I, Sutton TT – Pruning the pearlsides: reconciling morphology and molecules in mesopelagic fishes (Maurolicus: Sternoptychidae)

Bakken T, Oug E, Kongsrud JA, Alvestad T, Kongshavn, K – Polychaetous annelids in the deep Nordic Seas: strong bathymetric gradients, low deep-sea diversity and underdeveloped taxonomy

Xavier JR, Marco J, Rapp HT, Davies AJ – Predicting suitable habitat for the bird’s nest sponge Pheronema carpenteri (Porifera, Hexactinellida) in the Northeast Atlantic

DSC_1063

Posters:

Kongshavn K, Kongsrud JA, Tandberg AHS, Alvestad, T, Bakken, T, Oug, E, Willassen E – Intergrating DNA-barcoding and morphology to study marine invertebrates – Exploring biodiversity and biogeography of deep-sea polychaetes in the Norwegian Sea

Hestetun JT, Xavier JR, Rapp HT – Carnivorous sponges from the Southwestern Indian Ocean Ridge seamounts

Alvizu A, Tendal OS, Rapp HT – Deep-water calcareous sponges (Calcarea: Porifera) from the Norwegian, Greenland and Iceland Seas (GIN) – from abyssal plains to mid-ocean ridges and hydrothermal vents

(Xavier JR), Pereira R, Gomes Pereira JN, Tempera F et al – Sponge assemblages of the Condor seamount (Azores) characterized from underwater imagery

Olsen BR, Troedsson C, Hadziavdic K et al – The influence of hydrothermal fluids on pelagic eukaryotic microorganism diversity and subsequent prey selection in a pelagic amphipod in the Nordic Seas

Bilder Aveiro1

In addition to these direct contributions, it was very gratifying to see our friends and colleagues presents results that were in part based on University Museum assistance, whether through participation on cruises with us, loans of material, visits to the Museum collections or data made available. Quite a few of our photos also found their way into presentations, which is always fun!

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It was a busy week with a lot of information to absorb and a lot of old and new acquaintances and friends to talk to. We used this opportunity to spread the word about our current projects, and especially to discuss the challenges and potential of barcoding marine invertebrates.

We are very grateful to the organizing committee for taking on the herculean task of setting up such a wonderful symposium!

Obrigada/o!

Photo by @tangerina_ (Twitter)

Photo by @tangerina_ (Twitter)

Workshop aftermath

IMGP0475The lab is rather quiet today, compared with the frantic activity of last week – but there’s still plenty of work to do! We’ll catalog the identified material – several hundred entries – into our museum collections.

For NorBOL, a total of 250 polychaete specimens from 154 different species were selected for genetic barcoding, that’s pretty impressive! In addition, some of our participants selected material to loan with them, these will also in part become NorBOL-barcodes.

Samples, samples everywhere

Samples, samples everywhere

 

 

 

 

 

IMGP0468We’ll process these as quickly as we can, taking pictures, filling in the forms and taking tissue samples for analysis at the CCDB lab in Canada – fingers crossed for a high success rate on the sequencing!

Preparing drawings using a camera lucida on the stereo microscope

Preparing drawings using a camera lucida on the stereo microscope

 

As mentioned previously we focused on the MAREANO-material, but supplemented with other samples – including those that we have collected ourselves. That meant that beauties like this one (picture below) could be examined in detail by an expert, and get properly identified before we send it off to become part of the BOLD-database.

Previously Euchone sp, now we have it identified as Euchone analis

Previously Euchone sp, now we have it identified as Euchone analis

Thank you to all our participants for a very productive and fun week!