Category Archives: About

High(er) species diversity of Glyceriformia

goniadidae figHappy WormWednesday*!

One of our contributions at the International Polychaete Conference in Cardiff was a poster that dealt with how a combination of careful morphological examinations using the available literature and DNA barcoding of polychaetes in the families Glyceridae and Goniadidae from the West coast of Africa is indicating a much higher diversity than we can assign names to at the moment.

Head on over to our MIWA (Marine Invertebrates of Western Africa) blog to see the poster and learn more!

*that is an actual hashtag on Twitter – check it out!

A week of worms in Wales!

Does that not sound appealing?
It was actually a lovely event!

The IPC2016 logo © National Museum Wales

The IPC2016 logo © National Museum Wales

The 12th International Polychaete Conference took place in Cardiff, Wales during the first week of August. These events have been taking place every third year since 1981, and the previous one was in Sydney, Australia in 2013.

 

 

Polychaetologists assembled on the steps of the National Museum Cardiff (c) IPC2016

Polychaetologists anno 2016 assembled on the steps of the National Museum Cardiff © National Museum Wales

During an intensive week of presentations and posters spanning topics within Systematics, Phylogeny, Ecology, Methodologies, Biodiversity, Biodiversity and Ecology, Morphology, Reproduction & Larval Ecology, Development, and Polychaete studies, people had the chance to showcase their work, and learn more about what others are working on. The local organising committee invited us to “Have a happy conference, re-connecting with those already known, meeting correspondents for the first time, ans making new connections and new friends” – and I think we can safely say that the mission was accomplished!

Cardiff – and the National Museum Wales – was an excellent venue for “polychaetologists” from all over the globe.

Snapshots of Cardiff

Snapshots of Cardiff (photos: K.Kongshavn)

In all we were 190 attendees from about 30 countries present – including a sizeable Norwegian group! Some of us (below) gave talks, and most were also involved in posters. Results and material from large projects and surveys such as PolyNor (Polychaete diversity in Nordic Seas), MAREANO (Marine AREA database for NOrwegian waters),  NorBOL (The Norwegian Barcode of Life), and MIWA (Marine Invertebrates of West Africa) were all well incorporated in the Norwegian contributions.

There were in fact a lot of contributions involving one or more collaborators from a Norwegian institution (UM, NTNU, NIVA, The SARS center, NHM Oslo, Akvaplan-NIVA ++) being presented during the conference. It is really nice to see that the community is growing through recruitment of both students and international researchers.

Norwegian delegates lining up in the City Hall before the start of the banquet

Norwegian delegates lining up in the City Hall before the start of the banquet

As Torkild said in his excellent blog post (in Norwegian, translation by me):

Pins marking where participants come from - this was not quite completed when the photo was taken, but none the less - we beat Sweden!

Pins marking where participants come from – this was not quite completed when the photo was taken, but none the less..well represented!

With so many active participants in the field, a lot of exciting research is being carried out in Norway. Not only do we have many projects – large and small – running at our institutions involving our “regular” Norwegian collaborators; there is also a significant proportion of international participation in these projects.

Furthermore, our activities enable researchers from all over the world to visit or loan from our scientific collections, and study the substantial (new) material that the projects are generating. It is nice to see that our efforts are being recognized in the international community! The recent flurry of activities has been well aided by the Norwegian Species Initiative (Artsprosjektet) (and the MIWA-project at UM).

The majority of our research is based on, or incorporates, museum material from our collections. The collections have been built over years, decades and even centuries, and continue to increase in scientific value as new science is added.

It is gratifying to see the material being used, and we hope it will gain even more attention in the aftermath of the conference.

From the poster session - these are some (!) of the posters we were involved in

From the poster session – these are some (!) of the posters we were involved in (photos: K.Kongshavn)

The University Museum was well represented, both in attendance, and in contributions. Below is a list of what we (co-)authored, presenting author is in bold, and University Museum people are in italics. We plan on posting some of the posters here, so stay tuned for that!

Presentations:

  • Giants vs pygmies: two strategies in the evolution of deep-sea quill worms (Onuphidae, Annelida)
    Nataliya Budaeva, Hannelore Paxton, Pedro Ribeiro, Pilar Haye, Dmitry Schepetov, Javier Sellanes, Endre Willassen
  • DNA barcoding contributing to new knowledge on diversity and distribution of Polychaeta (Annelida) in Norwegian and adjacent waters
    Torkild Bakken, Jon A. Kongsrud, Katrine Kongshavn, Eivind Oug, Tom Alvestad, Nataliya Budaeva, Arne Nygren, Endre Willassen
  • Diversity and phylogeny of Diopatra bristle worms (Onuphidae, Annelida) from West Africa
    Martin Hektoen, Nataliya Budaeva
  • Experiences after three years of automated DNA barcoding of Polychaeta
    Katrine Kongshavn, Jon Anders Kongsrud, Torkild Bakken, Tom Alvestad, Eivind Oug, Arne Nygren, Nataliya Budaeva, Endre Willassen

Posters

  • Diversity and species distributions of Glyceriformia in shelf areas off western Africa
    Lloyd Allotey, Akanbi Bamikole Williams, Jon Anders Kongsrud, Tom Alvestad, Katrine Kongshavn, Endre Willassen
  • Eclysippe Eliason, 1955 (Annelida, Ampharetidae) from the North Atlantic with the description of a new species from Norwegian waters
    Tom Alvestad, Jon Anders Kongsrud, Katrine Kongshavn
  • Phylogeny of Ampharetidae
    Mari Heggernes Eilertsen, Tom Alvestad, Hans Tore Rapp, Jon Anders Kongsrud
  • Ophelina (Polychaeta, Opheliidae) in Norwegian waters and adjacent areas – taxonomy, identification and species distributions
    Jon Anders Kongsrud, Eivind Oug, Torkild Bakken, Arne Nygren, Katrine Kongshavn
  • Pista Malmgren, 1866 (Terebellidae) from Norway and adjacent areas
    Mario H. Londoño-Mesa, Arne Nygren, Jon Anders Kongsrud
  • Lumbrineridae (Annelida, Polychaeta) from Norwegian and adjacent waters with the description of a new deep-water species of Abyssoninoe
    Eivind Oug, Katrine Kongshavn, Jon Anders Kongsrud
  • Nephtyidae (Polychaeta, Phyllodocida) of West African shelf areas
    Ascensão Ravara, Jon Anders Kongsrud, Tom Alvestad
  • Phylogeny of the family Maldanidae based on molecular data
    Morten Stokkan, Jon Anders Kongsrud, Endre Willassen

We had a mid-week excursion where we got to see a bit more of our hosting country; namely the impressive Caerphilly Castle constructed in the 13th century and still looking magnificent today, and a lovely lunch at the Llanerch wineyard with time for informal mingling and catching up.

castle

Caerphilly Castle (photo: K.Kongshavn)

Note the red dragon in the Castle wall; this is the dragon of the Welsh flag. The story goes something like this (according to Wikipedia, at least!): From the Historia Brittonum,[2] written around 830 a text describes a struggle between two serpents deep underground, which prevents King Vortigern from building a stronghold. This story was later adapted into a prophecy made by the wizard Myrddin (or Merlin) of a long fight between a red dragon and a white dragon. According to the prophecy, the white dragon, representing the Saxons, would at first dominate but eventually the red dragon, symbolising the Britons, would be victorious.

Being museum people (er..? People employed at a museum, I mean!) ourselves, we made sure to visit the exhibitions as well, and especially the new “Wriggle!” exhibition, which is all about..worms! Lots of fun, and a*a lot* of information packed in. Make sure to visit it, if you get the chance!

Visiting the "Wriggle!" exhibition during the Ice Breaker event

Visiting the “Wriggle!” exhibition during the Ice Breaker event

The attendants have also been busy on Twitter, visit @IPC2016 or check #IPC12Cardiff for loads of photos and on-the-spot-commentaries

Finally, we would like to extend our heartfelt thanks to the arranging committeeDIOLCH!

Cheers, Katrine

ps: Dw i’n hoffi mwydod!

On the hunt for seaweeds!

The red, the green, and the brown

The red, the brown, and the green

This week the invertebrates are forced to take second place (!) as I have joined the master students participating on the course BIO309A – marine floristics out at our field station.

Lab work

Lab work

The course is the sister course to Marine faunistics that I joined in on last fall. The focus of this week is the macroalgae; the seaweeds that most people are (passingly) familiar with. (The micro algae have been covered in lectures and lab work back at BIO earlier.)

We are doing a mix of field work and lab work. Every day we go out and sample, and bring the catch back to the lab to identify it. 1-2 specimens of each species that is identified is destined to become barcode vouchers for NorBOL, and go through the by now fairly familiar route of photo-tissue sampling-preservation for inclusion in the museum collection as a voucher. Seaweeds fixate badly in ethanol, so instead we are pressing them and making herbarium specimens. So far we have about 50 vouchers (from almost as many different species), and the number is sure to climb as we continue working our way through the fresh stuff we just collected.

Collecting just outside the station

Collecting just outside the station

IMGP0870

Kjersti is explaining about the current habitat

Ah, such a hard day to be at sea!

Ah, such a hard day to be at sea!

Vivid!

Vivid!

Being ferried across to the island where we'll examine the tide pools

Being ferried across to the island where we’ll examine the tide pools

Nice location!

Nice location!

"that one!"

“that one!”

Kjersti is explaining the habitat

Hunting

Wave exposed!

Wave exposed!

I do "happen" to find some animals *on the lagae as well - here's a beautiful nudibranch, a Doto cf. maculata

I do “happen” to find some animals *on the algae as well – here’s a beautiful nudibranch, a Doto cf. maculata

Undercover amphipod

Undercover amphipod

Hydrozoans and two Aplysia punctata hanging out on a piece of Ascophyllum nodosum

Hydrozoans and two Aplysia punctata hanging out on a piece of Ascophyllum nodosum

Today is Taxonomist Appreciation Day!

Initiated in 2013 by Dr. Terry McGlynn, March 19th has become

the International Taxonomist Appreciation Day!

The what, now?

 Carl von Linné 1707–1778 painted by A. Roslin. (Wikimedia)

Carl von Linné 1707–1778 painted by A. Roslin (Wikimedia)

Taxonomy is the science of naming, describing and classifying organisms and includes all plants, animals and microorganisms of the world. Using morphological, behavioural, genetic and biochemical observations, taxonomists identify, describe and arrange species into classifications, including those that are new to science.

Modern taxonomy began with Carl Linnaeus (1707 – 1778), who devised the formal binominal (two-part) naming system we use to classify all lifeforms. Since then, approximately 1.7 million animal species have been formally described (according to the IUCN (2014)).

It is of course impossible to give a definite number for how many species that are still awaiting recognition and formal description, but a estimate by Mora et al. in 2011 suggest that

In spite of 250 years of taxonomic classification and over 1.2 million* species already catalogued in a central database, our results suggest that some 86% of existing species on Earth and 91% of species in the ocean still await description. Renewed interest in further exploration and taxonomy is required if this significant gap in our knowledge of life on Earth is to be closed.

From Buzz Hoot Roar

If you want to know more about what taxonomists do, you can have a read here: Taxonomy matters. Here’s why (Lyman Museum at McGill University).

There is a lot of work still to be done – and far too few taxonomists available to do it – so please appreciate the ones that we have!

Celebrate the day by

  • giving your local taxonomist a cup of coffee (or tea), and a word of encouragement (a big pile of money for research wouldn’t be amiss, either!)
  • check out the taxonomy pun contest at Buzz Hoot Roar (“a graphics-driven blog that shares and/or explains a scientific concept in 300 words or less”)
  • visit Curious Taxonomy for funny, punny, interesting and plain strange species names – and share your favourites!
    Some of ours include:
    Did you know that there is a genus of small marine snails named Ittibittium? These are – of course – smaller than molluscs of the genus Bittium.
    Strategus longichomperus (Ratcliffe) is a Honduran scarab with long mandibles.
    Ytu brutus (Spangler, 1980) is a water beetle, “Ytu” comes from the local (in Brazil) word for waterfall.
    Has your favourite book/movie/game characters been honoured with a naming?
    Aleiodes atuin, A. binkyi, A. deathi ++ (Butcher et al. 2012) are braconid wasps – all named from Terry Pratchett’s Discworld series. [Zootaxa 3457]
    Darthvaderum (Hunt, 1996) is an oribatid mite “When I saw the SEM (scanning electron micrograph) of the gnathosoma I immediately thought of Darth Vader, evil antihero of Star Wars.” [Records of the Australian Museum 48: 303-324]
    Gwaihiria (Nauman) is a diapriid wasp named for Gwaihir, Lord of the Eagles.
  • visit the Biodiversity Heritage Library and learn something new
  • visit the exhibitions at your local Natural History Museum (Bergen sadly excepted at the moment – we will open again in 2019!)
  • If you can read Norwegian, check out this post about Amphipod taxonomy and taxonomists, and peruse the ongoing biodiversity projects from the Norwegian Biodiversity Information Centre, where taxonomists work to better our knowledge of the local fauna and flora.
  • understand the value of Museum Collections for Research and Society
  • remember the naturalists who have perished in pursuit of knowledge by visiting The Wall of the Dead: A Memorial to Fallen Naturalists
  • tell your taxonomist co-workers that you appreciate their work!

 

#loveyourtaxonomist is the word of the day!

 


Mora C, Tittensor DP, Adl S, Simpson AGB, Worm B (2011) How Many Species Are There on Earth and in the Ocean? PLoS Biol 9(8): e1001127.

The World Conservation Union (2014) IUCN Red List of Threatened Species 2014.3. Summary Statistics for Globally Threatened Species. Table 1: Numbers of threatened species by major groups of organisms (1996–2014))

*see paper for explanation for this number vs the 1.7 million of the IUCN.

Travelogue from Jenni’s field-trip to California Academy of Sciences, San Francisco

Sea slugs and San Francisco

Phanerophthalmus sp. from Mozambique. Photo: Manuel A. E. Malaquias

Phanerophthalmus sp. from Mozambique. Photo: Manuel A. E. Malaquias

I am three months into the second year of my masters in marine biology, and was lucky enough to start off this semester with a three week trip to San Francisco in order to collect material for my project.

I am writing my master thesis for the University museum of Bergen on the phylogenetic systematics and evolution of a small marine gastropod.

The title of my project is “Patterns of speciation in the Indo-West Pacific, with a systematic review of the genus Phanerophthalmus (Cephalaspidea, Haminoeidae).

I will be using an integrative taxonomic approach combining fine-scale anatomical dissections and molecular phylogenetics to revise the taxonomy and be able to better understand the relationships of the species. The group is restricted to the shallow waters of the Indo-West Pacific and may therefore be used as a good model to study speciation and the historical biogeography of other organisms in this region.

In order to obtain specimens for this project loans have been made from various museums and academic institutions around the world. In total I have 60 specimens on loan from these various institutions, however they still only represent part of the diversity of the genus with limited geographical coverage. The California Academy of Sciences (CAS) in San Francisco holds the largest collection of sea slugs in the World, including specimens of the genus Phanerophthalmus, with over 100 specimens. So, it was arranged for me to visit this large collection and assess what was important for my project. Travelling to CAS also meant I was able to work alongside Dr. Terry Gosliner, a leading expert in the field of malacology.

Phanerophthalmus crawling on seagrass

Phanerophthalmus crawling on seagrass

Pier 39 and California sea lions

Pier 39 and California sea lions

So, on January 16th I got on a 10 hour flight to San Francisco. I stayed at a guest house in the Richmond district of San Francisco, about 40 min walk or 30 min bus from CAS.

Waking up on Sunday morning I was a bit jetlagged, but super excited to be in San Francisco. As it was Martin Luther King Jr. day tomorrow (Monday), I had two days to recover from the flight and adjust to the time difference (9 hours behind Bergen!).

I decided to go and explore the city so I took a bus to downtown San Francisco and went to Fisherman’s Wharf, to Pier 39 where the Aquarium of the bay is and also the California sea lions.

On Monday I went to see where I was going to be spending the next three weeks: at the California Academy of Sciences. Situated in Golden Gate park, the surroundings were beautiful.

Golden Gate park

Golden Gate park

Golden Gate Bridge

Golden Gate Bridge

 

After visiting the grounds of CAS I wandered over to the Golden Gate Bridge. There was rain in the air and the fog was coming down but the view of the bridge was spectacular.

 

 

 

 

 

 

California Academy of Sciences

California Academy of Sciences

Tuesday morning I arrived at CAS eager to dive into the collections. Terry met me at the staff entrance and after a chat and a coffee we got to work. The CAS database contained more than 100 specimens of Phanerophthalmus. The first few days were spent examining labels and matching live photos with specimens. The amount of material was a bit overwhelming and even though I would have liked to look at it all, this would not be possible during my short three week visit. So with guidance from my supervisor, Manuel Malaquias, I was able to focus on the most important specimens. As I am looking at the phylogeny of Phanerophthalmus it is important for me to have specimens which I can extract DNA from. It is also useful to know what these animals looked like live in order to maybe use the external morphology as a character for determining species.

The three weeks flew by so quickly. I spent my days with the collections, dissecting specimens and also got the opportunity to try the academy’s brand new scanning electron microscope. Terry was an amazing host and kept me busy. A huge thank you to him for dedicating so much time towards helping me out. Also, a huge thank you to everyone else at the academy for being so nice and welcoming. After my three weeks at CAS I had a few days to be a tourist in the city. My last weekend in the city happened to be Super Bowl 50 weekend and the city was buzzing with people and events. All in all I had a great visit, and now I have lots of material to carry on working with back in Bergen.

The collections (top), my dissection station (bottom left) and the male reproductive of Phanerophthalmus

The collections (top), my dissection station (bottom left) and the male reproductive of Phanerophthalmus

Scanning electron microscope session with Terry

Scanning electron microscope session with Terry

Alcatraz

Alcatraz

The amazing redwood trees at Muir Woods just outside the city

The amazing redwood trees at Muir Woods just outside the city

Keep calm and focus on sea slugs

Keep calm and focus on sea slugs

-Jenni

Guest researchers: Mario

We started early with visitors for 2016; Mario arrived already on the 4th of January!

Mario, on his temporary spot in the lab, studying spaghetti worms.

Mario, on his temporary spot in the lab, studying spaghetti worms.

 

Mario’s home institution is the University of Antioquia, in Medellin, Colombia, and the contrast to snow covered (and/or rain swept) Bergen has been great; this was his first time having snow beneath his shoes.

 

 

 

Arne

Arne

Another of our polychaete collaborators, Arne Nygren from Sjöfartsmuseet Akvariet in Gothenburg (Artsprosjekt can be found here (NO)) seized the chance to visit as well, and together with the resident polychaetologists (Jon, Tom and Nataliya) it meant that we suddenly had an impromptu polychaete workshop on our hands 🙂

Being able to meet in person makes the work flow smoother all around, as work was delegated and plans concretized. 2016 is likely to be a year with much focus on the Polychaeta, as it is both the final year of the PolyNor project (ends in spring), and the year of the 12th International Polychaete Conference, which will be held in Cardiff, Wales.

 

During Mario’s month-long stay he was examining the collection of terebellids from West Africa and the museum’s collection of the bristle worm genus Pista, much of which will later be barcoded through NorBOL (for the Norwegian material) and MIWA (for our West African samples).

Pista cristata identified by Dr. T. Holthe, one of the most important experts on spaghetti worms, from University of Bergen. RCP. Photo: MHL

Pista cristata identified by Dr. T. Holthe, one of the most important experts on spaghetti worms, from University of Bergen. RCP. Photo: MHL

In his own words:

Eupolymnia nebulosa after one collecting trip to Lysefjord close to Bergen. Photo: MHL

Eupolymnia nebulosa after a collecting trip to Lysefjorden close to Bergen. Photo: MHL

I usually work on the morphology of just one of the several families of polychaetes, the Terebellidae, or spaghetti worms. This visit has been very important since we have been able to separate four Pista species from the North Sea, using both morphological and molecular tools. “The combination of these two different methods has been superb”.

Jon, Arne and I began this study during August 2014, but this undertaking seems like it will never end because we keep adding more material. The recent findings have been the significance of some characters that did not have taxonomical importance in the past. Now, they are the clues for splitting very close species.

But this is not enough; it was possible to identify 43 species of terebellids belonging to 16 different genera, from material collected along the West African coasts.

This is a high polychaete diversity in only one family. For example, we found three Lysilla species, in a region with only one recorded species. New species? Highly possible. One can only wonder what the diversity of the remaining families is?

Verticilate chaetae (bristles) from one of the polycirrinae species photographed through a microscope. Photo: MHL

Verticilate chaetae (bristles) from one of the polycirrinae species photographed through a microscope. Photo: MHL

Methyl-green staining pattern of one of Pista species. Photo: MHL

Methyl-green staining pattern of one of Pista species. Photo: MHL

 

 

 

 

 

 

 

 

 

All this was accompanied with a perfect view through the window, seeing it snow some days, or watching the Sun on the mountains in front; some times with white top mountains, some times with deep blue sky. A landscape like that never could be my company in my tropical city.

Snowy view from the lab window Photo: MHL

Snowy view from the lab window Photo: MHL

Thank you for visiting, it was very nice having you here – we wish you the best of luck with your next adventure in Antarctica!

Biodiversity Valentines

This gorgeous polychaete (Bristle worm) is from the family Serpulidae, it was identfied as a Pomatoceros triquetes during the students' course in marine faunistics

This gorgeous polychaete (bristle worm) is from the family Serpulidae, it was identified as a Pomatoceros triquetes during the students’ course in marine faunistics (Photo: K.Kongshavn)

Release the Kraken!

Oh, dear… this challenge:

Please share your love of biodiversity this Valentine’s Day with the hashtag #bdvalentine.

Have fun and help raise awareness of biodiversity and conservation!

We’ll be on Twitter and Facebook celebrating all day on Friday, February 12th with “Biodiversity Valentines.” Tweet your best biodiversity-themed Valentine message with the hashtag #bdvalentine.  You can borrow from our growing Facebook gallery of #bdvalentine images here:  https://goo.gl/dZkQdS .

Get your creative juices flowing (and your creative and communications folks brainstorming)!  We’ll retweet and create a gallery of your images all day on Friday, February 12th.

At JRS, we’re working to increase the use of biodiversity data and information services for conservation and sustainable development in Africa.  We love biodiversity data.  Join in with your #bdvalentine!

ticked into our in-box from the JRS Biodiversity Foundation a couple of days ago, and we decided to give it a spin.

Now, biologists seem to gravitate towards punny (and occasionally funny) humour, and there’s been an avalanche of submissions and suggestions on what we could post.

Here’s a selection of submissions from the Invertebrate collections, we hope you’ll enjoy them!

Interspecies <3 between Laonice sarsi and L. bahusiensis (photo:T. Alvestad)

IMGP0065

This little Cephalopod was collected by MAREANO. (Photo: K.Kongshavn)

This little Cephalopod was collected by MAREANO. (Photo: K.Kongshavn)

This cuttlefish was encountered in an Aquarium, and thus does not reside in our collections! They belong to the class Cephalopoda, which also includes squid, octopodes, and nautiluses. Cuttlefish have a unique internal shell, the cuttlebone. Despite their name, cuttlefish are not fish but molluscs. (Photo: K.Kongshavn)

This cuttlefish was encountered in an Aquarium, and thus does not reside in our collections! They belong to the class Cephalopoda, which also includes squid, octopodes, and nautiluses. Cuttlefish have a unique internal shell, the cuttlebone. Despite their name, cuttlefish are not fish but molluscs. (Photo: K.Kongshavn)

IMG_2773

Not a local species! Jelly fish do not have a independent circulatory system, nor do they have structured organ systems, brain, or breathing apparatus.

isopod_stack

A friendly (?) Isopod from the Cirolanidae family.

IMG_2738-001

ZMBN_106092_4

Uncini bristles from a Euclymene (Maldanidae) polychaete

Uncini bristles from a Euclymene (Maldanidae) polychaete. The picture is taken with an Scanning Electron Microscope (SEM) at our local SEM lab. The scale bar is 2 µm, or 0.002 mm, so these are truly TINY structures.

crabby.tif

Here’s an Ebalia sp. that we have barcoded through NorBOL.

Here's a Urticina eques (Photo: K.Kongshavn)

Here’s a Urticina eques (Photo: K.Kongshavn)

A Crossaster papposus collected for NorBOL together with the local student dive club SUB (Photo: K.Kongshavn)

A Crossaster papposus collected for NorBOL together with the local student dive club SUB (Photo: K.Kongshavn)

A marine snail in the family Naticidae (Photo: K.Kongshavn)

A marine snail in the family Naticidae, also known as moon snails or necklace shells. These snails are predators, mainly feeding on Bivalves (Photo: K.Kongshavn)

We could not resist, even though it's a vertebrate (Photo: K.Kongshavn)

Look at that face! We could not resist including him(?), even though it’s a vertebrate (Photo: K.Kongshavn)

(Photo: K.Kongshavn)

apologies for the ear worm!

Well, we sure had fun – we hope you did too!

Make sure to check out other contributions to the hashtag #bdvalentine on Twitter and Facebook.

Door #22: The Heart of the Museum

IMGP0794

Today’s topic is the collection of type specimens of invertebrates at the University Museum,  the true heart of the collections.

 

Some of our ethanol-preserved type specimens

Some of our ethanol-preserved type specimens

“Type specimens are the objective standard of reference for the application of zoological names. When a new species or subspecies is described, the specimen(s) on which the author based his/her description become the type(s) (Article 72.1). In this way names are linked to type specimens, which can be referred to later if there is doubt over the interpretation of that name.

Consequently types are sometimes referred to as “onomatophores” which means name bearers.”

International Commission on Zoological Nomenclature (IZN)

 

Wikipedia has neat page about type specimens, so we are borrowing some text from them: “Although in reality biologists may examine many specimens (when available) of a new taxon before writing an official published species description, nonetheless, under the formal rules for naming species (the International Code of Zoological Nomenclature), a single type must be designated, as part of the published description.

A type description must include a diagnosis (typically, a discussion of similarities to and differences from closely related species), and an indication of where the type specimen or specimens are deposited for examination.

The geographical location where a type specimen was originally found is known as its type locality.Wikipedia

Zoological collections are maintained by institutions such as universities and museums. Ensuring that types are kept in good condition and made available for examination by taxonomists are two important functions of such collections. The particular specimen that the species description is based on is called the holotype.

Frequently the first description of a species was also based on additional individuals. These individuals are called paratypes and are supposed to reflect some of the morphological variability of the species. Our museum has accumulated about 1500 type specimens of (non-insect) invertebrates since the mid 18hundreds, but the number is not yet exact due to a dubious status of some of the oldest specimens. We are keeping those types that are preserved in liquid in a climate regulated room.

When the specimens have been mounted by the researcher on glass slides for microscopy, we are keeping those in special cabinets that are portable in case evacuation of the building should be necessary.

The type collections continue to grow as new species are being described, and new material is deposited in our care.

The Holotype of Chamaedrilus varisetosus, new species described by Martinsson et al. 2015 and one of several recent additions to the type collection of invertebrates in Bergen. (Photo: E.Willassen)

The Holotype of Chamaedrilus varisetosus, new species described by Martinsson et al. 2015 and one of several recent additions to the type collection of invertebrates in Bergen. (Photo: E.Willassen)

Screen-dump from the paper by Martinsson et al. (2015)

Screen-dump from the paper by Martinsson et al. (2015)

Type specimen on microscopy slides are kept in special cabinets. This shows the Holotype and Paratype of the small worm Chamaedrilus varisetosus, which was described for the first time by a group of Swedish and Italian researchers this year (Martinsson, Rota, Erséus (2015): ZooKeys 501: 1–14. doi: 10.3897/zookeys.501.9279) (Photo: E.Willassen)

Type specimen on microscopy slides are kept in special cabinets. This shows the Holotype and Paratype of the small worm Chamaedrilus varisetosus, which was described for the first time by a group of Swedish and Italian researchers this year (Martinsson, Rota, Erséus (2015): ZooKeys 501: 1–14. doi: 10.3897/zookeys.501.9279) (Photo: E.Willassen)

When someone works on the taxonomy of a group of animals (be it on order, family, genus or species level) they will often need to re-examine the type material. This makes the type collection perpetually crucial for the research community – and a great responsibility for the Museum.

Jon, one of the PhD-students at BIO, examining the type specimens of the sponge Chondrocladia (Chondrocladia) michaelsarsi

Jon, one of the PhD-students at BIO, examining the type specimens of the sponge Chondrocladia (Chondrocladia) michaelsarsi

Type specimen of Chondrocladia (Chondrocladia) michaelsarsi

Type specimen of Chondrocladia (Chondrocladia) michaelsarsi collected in 1910, described by Emily Arnesen in 1920 – you can find the species description here (pdf).

Door #9: Delving into the DNA

From the pre-PCR lab

From the pre-PCR lab

The four PCR-machines lined up

The four PCR-machines lined up

We are very fortunate in that we have a modern DNA lab available «just down the street» from us, as the University Museum is part of the shared Biodiversity laboratories (BDL) structure.

The BDL is a formalized cooperation between three research groups at Dept. of Biology (Marine biodiversity, Geomicrobiology and the EECRG), and two of the research groups at the University Museum. One of the senior engineers if this lab is a Museum employee, and from time to time we are also able to hire in other collaborators for specific projects.

 

 

 

Pipetting

Pipetting samples onto one of the plates that we fill with DNA-extracts

 

For the past couple of months we’ve had a technician – Morten – working on resolving some of the challenges that we run into when we work on COI barcoding of marine invertebrates.

Unlike many of the other groups that this method works exceedingly well for (like the Diptera), we are experiencing difficulties in obtaining DNA barcodes from a significant proportion of our samples.

IMGP0775-001We are currently focussing particularly on the Polychaeta (bristle worms), as this is the group we have submitted the majority of samples from in both our major barcoding projects: MIWA (Marine Invertebrates of Western Africa) and NorBOL (Norwegian Barcode of Life).

 

Morten has been working on obtaining DNA from the more problematic species, by troubleshooting and tinkering on various aspects of the ways we extract and amplify genes.

Basically there are more or less standardized ways of obtaining DNA, and these methods normally works well. Unfortunately (for various reasons) this is not always the case, and this is where we have to alter the protocols to see if we can find a way to retrieve the sample DNA from the specimens.

So far it looks quite promising; we’ve been able to fill in some of the most important “blanks” in our datasets – and we’re not done yet!

– Morten & Katrine