Category Archives: Phylogenetics

Three new species of polychaetes described!

Fresh off the press:

Diversity of Orbiniella (Orbiniidae, Annelida) in the North Atlantic and the Arctic“,
published in ZooKeys. DOI: 10.3897/zookeys.1205.120300 (link goes to paper, it is Open Access)screenshot of the paper header

In this recent publication, PhD candidate Miguel and his co-authors present three new species of marine bristle worms (polychaeta) in the family Orbiniidae, all from the genus Orbiniella.
The work focused on studying the diversity of the group from the North Atlantic and the Arctic, and has used a combination of molecular and morphological analyses.

The new species have been named Orbiniella parapari, Orbiniella griegi,  and Orbiniella mayhemi. The choice of names (etymology) goes as follows:

  • O. parapari: This species is dedicated to the Spanish polychaetologist Dr. Julio Parapar, who described the first Orbiniella species in the North Atlantic waters, Orbiniella petersenae Parapar, Moreira & Helgason, 2015.
  • O. griegi: This species is named in honour of Edvard Grieg, the Norwegian musician born and raised in Bergen, the city where the present study was conducted.
  • O. mayhemi: The species is named in honour to the Norwegian Black Metal band from Oslo, Mayhem, one of the bands that most contributed to the development of the Norwegian Black Metal in the 90-s. MAM was listening to their music to endure the darkest hours in the lab.

This may the first time classical composer Edvard Grieg and infamous black metal band Mayhem are presented as closely related?

A scientific illustration with B&W SEM images of a small worm

Figure 7  from the paper, showing details of Orbiniella mayhemi Meca & Budaeva, sp. nov. Image credit: Miguel A. Meca et al. 2024, CC BY 4.0

Citation: Meca MA, Kongsrud JA, Kongshavn K, Alvestad T, Meißner K, Budaeva N (2024) Diversity of Orbiniella (Orbiniidae, Annelida) in the North Atlantic and the Arctic. ZooKeys 1205: 51–88. https://doi.org/10.3897/zookeys.1205.120300 (link)

Student visits – Ellisiv and Maria

A guest post from two of our MSc students (in this case co-supervised with NTNU) who were here on a research visit for three weeks in January 2024. 

We are Maria Buhaug Grankvist and Ellisiv Tomasgard Raftevold, and for the past three weeks we have been visiting the University Museum in Bergen to work on our master’s projects. It’s been a lot of fun, a lot of hard work and very useful, as the Bergen University Museum really is the place to be when you’re working with marine invertebrates.

Both our theses focus on marine invertebrates, but two different phyla. Maria is working with cyclostomatid Bryozoans, while Ellisiv looks at Polychaetes. We write our masters for the NTNU University Museum in Trondheim in collaboration with the University Museum in Bergen and the projects “Digitization of Norwegian Bryozoa” (NorDigBryo) and “Marine Annelid Diversity in Arctic Norway” (ManDAriN). Keep reading, and you will learn about our projects and what we recommend to do when visiting Bergen!

Ellisiv’s marine annelids:
I’m Ellisiv and in my master’s thesis, I study a marine Annelid or Polychaete genus called Flabelligera within the family Flabelligeridae. Flabelligerids are mostly benthic and can be found from the intertidal zone down to the deep sea. They like living in the sand or mud, or under rocks, and they can be quite small and have sediment camouflage or a completely transparent body and outer sheath and may therefore be quite hard to find. If you do find them they are quite cool to look at, and if they are transparent, you can see their internal organs and green circulatory system. Their most prominent character is the cephalic cage, which is a circle of bristles around their mouths forming a kind of cage. In the ecosystem, these animals have an important role in that they for example eat the marine snow that falls to the bottom of the oceans so that it can be recycled back into the food chain.

Flabelligera affinis, a species within this genus was until recently thought to be only one species and was thought to have a worldwide distribution. This, however, was shown not to be true when Salazar-Vallejo 2012 restricted F. affinis to arctic areas and reinstated F. vaginifera which was previously synonymized with F. affinis, and proved that it was at least two different species sorted into one. Also looking at the material we have in the museum collections and DNA samples it was suspected that there are multiple different species sorted into F. affinis.

This is the problem I am trying to solve in my master’s thesis, and to do this I need to study the specimens found in the museum collections that are sorted to F. affinis and look at their different morphological characters and sort them into groups. This is mostly what I have done in Bergen. However, these species are very similar, and sequencing their DNA to look at their relatedness is a very useful addition to the morphology. Hopefully, I can get a step closer to solving this taxonomic confusion in my master’s and we can get to know how many species are hiding within Flabelligera.

Maria and the bryozoans:
I’m Maria, and for my master thesis I’m recording the diversity of bryozoan species within the order Cyclostomatida in Norwegian waters (meaning off the coast of Norway, the arctic ocean and some nearby areas). In addition to creating a checklist of recorded species, I’m mapping out their geographic and bathymetric distribution. In short, I’m trying to provide an answer to the question: What species of Cyclostomatida do we have, and where do they live?

There are two main reasons for studying this particular phylum in my thesis. First, they are strongly understudied, and according to a report published by the Norwegian Taxonomy Initiative in 2021, our understanding of bryozoan distribution and ecology is weak and unsatisfactory, even with “essential knowledge gaps” in some areas.
The second reason explains why it’s an issue that we know so little about these animals: They are majorly important for many marine ecosystems! Nearly all bryozoans are colonial, so even though the zooids (term for an individual animal in a colony) is only 0,1 – 0,5 mm long, the colonies can be as much as half a meter tall or wide! Many of the colonies have intricate shapes supported by heavily calcified structural zooids, providing habitats for a wide range of other animals. In this way, the bryozoans promote biodiversity in much the same way corals do, but they are far less known and barely protected by law like their coral counterparts.

To protect these beautiful colonial creatures we first of all need to know them better. Mapping the actual diversity and distribution of Norwegian bryozoans is far too large a task for a two year master thesis, but my thesis will hopefully contribute to the final results of the NorDigBryo project.

DNA sequencing
For both our theses we use an integrative approach, combining the morphology (what we see/the physical traits of the animals) with genetic sequence data. DNA sequencing is one of the things we got to do in Bergen, and it was very interesting to see how this is done from start to finish. We got to extract the DNA, use PCR and specific primers to amplify the DNA string of interest and gel electrophoresis to test if the prior methods worked.

For the successful sequences, we got to try the Sanger sequencing method, and it is very exciting to get to use some of our own sequences in our theses.

When in Bergen:
You’d might think that when we finish long days at the university museum, looking at marine invertebrates from dusk till dawn, we would go and do something completely different when the weekend comes. You’d be wrong!
In our spare time in Bergen, we went to see the University Museum of Natural History and were there almost from when it opened until it closed because there were so many interesting exhibitions. There are so many beautiful creatures on the planet, many of them and the story of how they evolved, you can learn about at the museum. We of course especially loved the “deep sea-room” where we would sit for a long time while watching a cephalopod swimming around deep sea sulfur vents..soothing.


More about the projects:
Marine Annelid Diversity in Arctic Norway (ManDAriN) home page (UiB)
ManDAriN presented at Artsdatabanken

Digitization of Norwegian Bryozoa (NorDigBryo) home page (UiO)
NorDigBryo presented at Artsdatabanken
NorDigBryo is also on Instagram – give us a follow!

-Ellisiv & Maria

It was our pleasure hosting these two enthusiastic guests, and we wish them luck in the thesis work – stay tuned for updates! 

PS: Interested in a marine master thesis at the University Museum of Bergen? Check out the blog detailing potential projects, or get in touch with the staff listed!

ForBio Annual Meeting 2023 at the University Museum of Bergen

ForBio – Research School in Biosystematics held its 12th Annual Meeting at the University Museum of Bergen on September 19-21st.Sixty participants from Norway, Sweden, Iceland, Czech Republic, Poland, Germany and Peru presented their research results in various fields of biosystematics.

The main day of the meeting took place in the Tårnsalen – a beautiful venue at the top of the museum building and was opened by a talk by Endre Willassen on the history of marine research at UiB.

The participants - 60 of them - in the historical Tårnsalen. The photo is taken from up on a gallery in the room, so it's a bird's eye view

The participants in Tårnsalen. Photo: ForBio

Four keynote speakers gave lectures on general biodiversity research topics of high interest to a wide audience.
Michael Bok from Lund University talked about the evolution of visual systems in marine annelids. Lovisa Gustafsson from the Stavanger Botanic Garden talked about the evolution of reproductive isolation in Arctic plants. Tomas Roslin from the Swedish University of Agricultural Sciences discussed the ways to assess enormous diversity of insects using DNA barcoding, and Agnes Weiner from NORCE gave a lecture on using ancient DNA in the past marine biodiversity assessments.

ForBio [LINK to homepage] is a cooperation between the main Natural History Museums in Norway: Natural History Museum, UiO; University Museum of Berge, UiB; NTNU University Museum; and the Arctic University Museum of Norway, UiT and supported by the Norwegian Biodiversity Information Centre.

Collage showing people presenting, and a statue of Christie with a rainbow over it.

From top left: Endre Willassen presenting his talk on the history of marine research at UiB, Christie (the statue) standing outside the Museum in quite typical Bergen weather, Miguel Meca on the systematic revision of orbiniid polychaetes, the result of his PhD project, a snapshot of the program, Vincent McDaniel gives his speed talk about the parasites in jellyfishes (ParaZoo project), and Martha Everett gives her talk on the diversity of scale worms in the Arctic, the results of her PhD project

ForBio aims to advance biosystematics education for students and postdocs working in the fields of botany and zoology. The annual meetings is a great arena for the students to meet their peers and mor senior scientists and to present their research project results, exchange ideas and expand their networks.

You can find upcoming courses and events here: link

-Nataliya Budaeva
ForBio-coordinator

PhD thesis defence

On June 7th Nina Therese Mikkelsen presented her thesis ” Phylogeny and systematics of Caudofoveata (Mollusca, Aplacophora)” for a public audience.  She was questioned by the opponents dr Mikael Thollesson, University of Uppsala, and dr Suzanne Williams, The Natural History Museum of London, and did an excellent performance explaining the results of her studies.

Evolutionary history of cave shrimps

Machumvi Ndogo - preparing for a dive in the dark

Machumvi Ndogo – preparing for a dive in the dark

In 2008 UiB colleagues Kenneth Meland and Endre Willassen surveyed karst caves in Zanzibar together with Hajj M. Hajj in search for aquatic crustacea. Many of these localities have so-called anchialine conditions in which marine water penetrates inland and can mix more or less with fresh ground water.

 

Atyid shrimps were sampled in salt water about 300 m inland from the coast.

Atyid shrimps were sampled in salt water about 300 m inland from the coast.

One of these sites had three species of small shrimps of the family Atyidae. The phylogenetic relationships of these shrimps have now been analysed by an international team of “cave men” based on full mitochondrial genome sequencing performed at the University of the Balears.

Molecular clock estimates date the relationship of the Zanzibarian species to other known species in the Atlantic and Indo-pacific  to the Cretaceous period.

Shrimps from Osine Cave

Shrimps from Osine Cave

The paper is available from this link:

https://www.nature.com/articles/s41598-017-03107-y

Species divergence history of the study group.

Species divergence history of the study group. Click for details.

Congratulations to our latest PhD!

Freshly minted PhD!  (photo: Kenneth F. Bosch)

Freshly minted PhD!
(photo: Kenneth F. Bosch)

Andrea successfully defended her Ph.D. thesis “Dietary specialization and molecular phylogeny of the family Aglajidae (Cephalaspidea: Gastropoda) with species delimitation analysis and biogeography of two genera from the clade Chelidonura sensu lato” earlier today. She was supervised by Manuel A.E. Malaquias from the Department of Natural History, UM, and Henrik Glenner from the Department of Biology.

You can read more about her work here (in Norwegian)

Congratulations and all the best wishes from us!

Below are photos of some of the species, if you are wondering how they look (pics by Manuel)

Guest researchers: Carlo

Untangling the diversity and evolution of Sea Hares

Aplysia parvula; Føllingen, Norway; Photo by Nils Aukan

Aplysia parvula; Føllingen, Norway; Photo by Nils Aukan

Sampling and freezing at Askøy

Sampling and freezing at Askøy

Dr Carlo M. Cunha from the Metropolitan University of Santos in Brazil (Universidade Metropolitana de Santos), a world expert in the diversity and systematics of Anaspidea heterobranch gastropods, visited the Natural History Museum of Bergen for a month during January/February 2017 to study our scientific collection of these molluscs. The visit was funded by the University of Bergen´s Strategic Programme for International Research and Education (SPIRE).

The Museum holds a large amount of material from the Scandinavian region, but also from the Mediterranean, Macaronesia islands, Caribbean, and western Indian Ocean.

These marine molluscs commonly known by sea hares comprise around 90 currently known species and have long been of major interest to biologists because of their large and easily accessible nervous system, which form the basis of numerous neurophysiological works.

Preserved specimen of Aplysia punctata from norway

Preserved specimen of Aplysia punctata from Norway

Dissected specimen of Aplysia punctata from Norway

Dissected specimen of Aplysia punctata from Norway

However, the taxonomy of these molluscs and their evolution are still poorly understood. Dr Cunha is using a combination of molecular and morphological tools to learn more about the worldwide diversity of anaspideans and their phylogenetic relationships.

Dr Cunha visit to Bergen has already resulted in the revision and update of the taxonomy of our Anaspidea collection. The Norwegian species of anaspids were revised and redescribed in detail using electron microscopy and DNA barcoding performed in collaboration with Louise Lindblom (University Museum / Biodiversity Labs).

SEM-image of jaws of Phyllaplysia sp from Florida, USA

SEM-image of jaws of Phyllaplysia sp from Florida, USA

Additionally several other species from around the world were studied and will be integrated in ongoing taxonomic revisions. Keep tuned!

-Manuel

We’ve also had Lloyd visiting recently, you’ll find a post about that on the Marine Invertebrates of Western Africa blog: click here

Door # 18: MSc completed

Congratulations to Jenni, our (former!) master student, who presented her MSc project last Friday!

She has been working on the phylogenetic systematics and evolution of a genus of small marine gastropods called Phanerophthalmus, and she’s done an impressive amount of work.

Phanerophthalmus crawling on seagrass. Photo: M. Malaquias

Phanerophthalmus crawling on seagrass. Photo: M. Malaquias

 

The project was titled
Systematics, biogeography, and trophic ecology of the genus
Phanerophthalmus A. Adams, 1850 (Mollusca, Cephalaspidea, Haminoeidae) in
the Indo-West Pacific, and was supervised by Manuel Malaquias.

Celebrating our freshly minted MSC with coffee, cakes and bubbles

Celebrating our freshly minted MSC (second from the left in top photo) with coffee, cake and bubbles!

We wish you all the best, Jenni!

Door #17: New master student

Polina

Polina

Polina Borisova, a first year master student from the Zoological Department of the Moscow State University (Russia), is coming to the Invertebrate Collections of the University Museum of Bergen with a 1-month research visit in January 2017.

Polina is going to work on the bristle worms from the family Lumbrineridae studying the collection from West Africa and Norway. Her project is jointly supervised by Dr. Nataliya Budaeva from the University Museum of Bergen and Dr. Alexander Tzetlin from the Moscow University.

Various Lumbrineridae from West Africa, scale 1 mm (Photos from BOLD).

Various Lumbrineridae from West Africa, scale 1 mm (Photos from BOLD).

Lumbrineridae are the worms with relatively poor external morphology but complex jaw apparatus. The structure of jaws has been traditionally used in the systematics of the family in the generic diagnoses. Polina is utilizing the methods of microCT to study the jaws of lumbrinerids in 3D.

Jaws of Scoletoma fragilis from the White Sea scanned using microCT showing ventral solid mandibles, forceps-like maxillae I and denticulate maxillae II and II, carriers of maxillae are omitted (Photo: P. Borisova)

Jaws of Scoletoma fragilis from the White Sea scanned using microCT showing ventral solid mandibles, forceps-like maxillae I and denticulate maxillae II and II, carriers of maxillae are omitted (Photo: P. Borisova)

Polina is also going to sequence several genetic markers to reconstruct the first molecular phylogeny of the family. This will allow testing the current hypothesis on the intergeneric relationships within Lumbrineridae and will aid in tracing the evolution of jaws within the family.

-Nataliya & Polina