Door # 11: Animal rocks and flower animals

The phylum Cnidaria is a diverse group of animals united by their ability to synthesize a complex type of ‘stinging’ cells called cnidocytes, which they use to hunt for their prey. The more than 13 000 species of cnidarians come in many shapes and colors, from the familiar jellyfish and corals, to the less famous myxozoans, hydroids, and siphonophores (read some more about those here). Because cnidarians live and thrive in marine and freshwater environments all around the world, humans have become familiar with them since ancient times: they have been feared for their sting, worn as jewelry, or simply admired for their beauty.

Sea nettles (genus Chrysaora) and ‘terrestrial’ nettles (genus Urtica) belong to very different groups of organisms, but share their name because of their stinging abilities. In some languages, like Norwegian and Swedish, cnidarians are called “nettle animals” (nesledyr and nässeldjur, respectively). Photo: Luis Martell (left), Nannie Persson (right).

Despite this familiarity, the true nature of cnidarians long remained unclear to naturalists and non-professionals alike. Perhaps to a greater extent than any other large phylum in the animal kingdom, people have historically failed to recognize cnidarians as animals, or even as living beings. Early civilizations had some knowledge about corals, sea-anemones and large jellyfish, all of which were encountered frequently along the coasts, but although fishermen and sailors knew about the existence of coral reefs (the massive bodies of coral represented major hazards for navigation), the animals themselves were probably seen only as pieces of rock. Some of the sessile species of cnidarians with a hard skeleton were considered minerals until the second half of the 17th century, when the use of magnifying lenses and the invention of the microscope allowed scientists to realize that the stony coral fragments washed up on the shore were actually made up of small flower-like organisms.

With their tentacles surrounding a central disc, sea anemones (in the image a specimen of Aiptasia) look somewhat like submarine flowers. Their plant namesakes (for example the wood anemone Anemone nemorosa) are strictly terrestrial. Photo: Joan J. Soto-Àngel (left), Nannie Persson (right).

Historically, the most persistent confusion regarding the cnidarians has been with plants and algae. For more than 1 500 years, the immobile sea anemones, sea fans, and hydroids were thought to be strange marine flowers and were consequently studied by botanists, not zoologists. They grow attached to the substrate and many species die if detached, which left early naturalists in doubt as to whether they were plants or animals. Thus, the category ‘zoophytes’ (from Ancient Greek ζῷον, zoon, ‘animal’ and φυτόν, phytón, ‘plant’) was created for them. It was only in the first half of the eighteenth century when this view started to change, thanks to the observations of J. A. Peyssonnel and the work of botanist Bernard de Jussieu, who together managed to convince their colleagues about the animal nature of the zoophytes.

The ‘sea tomato’ (Actinia equina) is a common cnidarian along the Atlantic coasts of Europe. It may look like a tomato when it is not covered by water, but is not related to its vegetal look-alike. Photo: Nannie Persson

The flowers of submerged marine plants (like this Cymodocea nodosa) are usually not as colorful or conspicuous as sea anemones and corals. Photo: Joan J. Soto Àngel

Today we know more about these organisms and there are no longer doubts about their affiliation to the animal kingdom, although we can still see evidence of their botanical past in the names of several cnidarian groups. The word Cnidaria comes from the Greek word κνίδη (knídē, meaning ‘nettle’, referring to the plant genus Urtica), and was inspired by the stinging power of the plants. One of the largest groups of cnidarians, the Anthozoa (which includes the flower-looking sea anemones and corals) is aptly named with a word deriving from the ancient Greek roots for flower (antho-) and animal (-zoa). Because there are still many open questions in cnidarian biology, initiatives that chart the diversity of cnidarians (like the successful project HYPNO and the upcoming project NORHYDRO) are necessary to get to know more about the particularities of these interesting animals!

-Luis Martell and Nannie Persson 


References:

Jussieu, B. de, 1742. Examen de quelques productions marines qui ont été mises au nombre des plantes, et qui sont l’ouvrage d’une sorte d’insecte de mer. Mem. Acad. Roy. Sci. Paris, 1742, 392.

Edwards, C. 1972. The history and state of the study of medusa and hydroids. Proc. R. S. E. (B). 73, 25: 247-257.

Door #10: The Molluscan Forum 2018 in London

Special 20th anniversary 22.11.18
The Malacological Society of London
Conference talk about citizen scientists

A few weeks ago, Manuel Malaquias, Justine Siegwald and me travelled to London in order to attend the 20th anniversary conference of the Malacological Society of London, UK. This society is dedicated to research and education on molluscs. Although based in London (as the name refers to), the society is internationally orientated and welcomes all members interested in the scientific study of molluscs. The society was founded in 1893 and registered as a charity. One of the many activities of the society is to organize meetings and symposia, and this year it turned out to be a 20th anniversary of the molluscan forum!

It was an incredible interesting day with a lot of inspirational posters and talks. My mission for that day was to present our ‘Sea slugs of Southern Norway’ project with the emphasis on how citizen scientist made this project a success. I wanted to share with the audience how citizen scientists with the right approach could be the future for many scientific studies.

Cessa presenting at the Molluscan Forum, 22th of November 2018

But first let us have a look into the meaning of citizen science. According to the Oxford English Dictionary, citizen science is scientific work undertaken by members of the general public, often in collaboration with or under the direction of professional scientists and scientific institutions. The term was first coined during the nineties in the United States of America. Since than it has grown in popularity, with multiple projects in the world that rely on the input of data generated by the general public. Some big and well-known examples are eBird, with roughly 411K users, Nasa Globe with 640K users, iNaturalist, with almost 1 million users and OPAL with 930K users and counting.

Increase of popularity of citizenscience projects per year, Nature 2018

Since the beginning of this year we put a lot of effort in setting up a network of volunteers and underwater photographers. We got many good people willing to contribute to our project and most them are located in the South of Norway, but we also have a few located more further up North in Norway. Currently we have around 150 members directly and indirectly involved in helping us with our project. We try to involve our citizen scientist in the project as much as possible and one way is by reaching out to them via several social media platforms. For example, in our Facebook group community members can participate in discussions about species descriptions and share their findings etc. But we also have an Instagram account that functions as a pocket field guide for followers. Besides we try to keep everyone up to date about the project by regular posting blogs.

Cessa showing the different social media platforms used in the project during the Molluscan Forum

But our key element in this project definitely goes to the assembly and design of our sampling kits. These were designed specially for our citizen scientists in order to make collecting easier, more accessible and more standardized for everyone. By trying to standardize the collecting steps with so-called instructed sampling kits we minimized the errors that could occur during sampling of the data. The sampling kits contain plastic jars for the samples, fixative, preprinted labels and a USB flash drive with enough space for high-resolution pictures and a preset excel file that only needs filling in.

Example of the content of a citizen science sampling kit designed for the Sea slugs of Southern Norway project

We noticed that this approach worked out and the data quantity and quality increased as well the recruitment became easier. When we look at all the Norwegian sea slug records from the museum collection since the 19th century, it consists of roughly 1400 records. In just over six months time we see that the contribution of the citizen scientists covers almost half of that.

A comparison of the amount of records collected by citizen scientists since this year compared to our museum collection

Eubranchus farrani species complex, one species or multiple?

The material that is sent in by the citizen scientists is at the moment being studied by us. We have two master students who will start working in January on a variety of taxonomic challenges by studying the different geographical material.

 

An example of this is Eubranchus farrani species complexes that have different color morphotypes from different geographical locations. Do we deal here with one species or multiple?

Stay tuned for a follow up!

Furthermore
Sea slugs of Southern Norway recently got its own Instagram account! Perfect for on the go if you would like to quickly check some species, click here https://www.instagram.com/seaslugsofsouthernnorway/ and don’t forget to follow us.

Become a member of the sea slugs of southern Norway facebook group, stay updated and join the discussion; https://www.facebook.com/groups/seaslugsofsouthernnorway/

Explore the world, read the invertebrate blogs!

-Cessa

Door #9: To catch an Amphipod

As many of you might have read earlier in this blog, the projects NorAmph and Hypno have been regularly sampling in Hjeltefjorden for the past year. As a part of my master thesis, I was lucky to be able to come with! My thesis will be about amphipods and their seasonal variety in Hjeltefjorden, which is super exiting!

The RP-sled used for the sampling.

For each time we go out, we sample with a RP-sled, a WP3 plankton net and we collect CTD data. The samples from the RP-sled will be used for my thesis and other projects if we find something interesting. During the last year we collected samples 9 times, which has given us some great days out at sea!

During these cruises we have had lots of fun! We have had cake, snacks and regularly done yoga on deck! We have been mostly lucky with the weather (except for our original cruise day in February, which had to be moved due to lots of wind, which you can read about here: Solskinnstokt)

 

A great view from our February cruise, with a clear blue sky and no wind! (Photo: K. Kongshavn)

We have been mostly lucky in getting great samples!

Lots of exciting material to get our hands on! (photo: AH Tandberg)

But sometimes not so lucky…

It is not easy to be a happy master student when the codend is almost empty… (Photo: AH Tandberg)

In October we had our last cruise, which was a great end to a year of sampling! We were not as lucky with the weather this time, but the samples look very nice. We also had cake to celebrate the last cruise day!

A great view in Hjeltefjorden (Photo: C. Østensvig)

Coffee breaks on deck are always important! (Photo: AH Tandberg)

It is somewhat sad to be done with the sampling, but with all the material collected, it is time to hit the lab! With all the samples, I sort out and identify all the amphipods I find. So far, I have found lots of cool amphipods, and I am starting to see some patterns in the material.

Here are some of the Amphipods I have found. All photos: K. Kongshavn

My work in the lab is far from done, and I am excited to look for new cool amphipods and hopefully find something interesting in their seasonal variation.

-Christine

Door # 8: The DNA-barcode identification machine

In a previous blog post I explained briefly how DNA-sequences are produced for the DNA-barcode library. Now I will show how the BOLD database can be utilized to identify species from sequences.

Some of the equipment used to produce DNA-sequences in our lab.

Say you have access to a lab that can produce DNA-sequences and you have a sample of a crab you cannot identify because some of the key characters are on body parts that have been broken and lost. You produce a DNA-sequence from the “barcode-gene” and open the identification engine in BOLDSYSTEMS.org.

Internet start window for the BOLD identification engine where you paste your unknown DNA sequence into the bottom blank window. (Click on picture to expand)

Having submitted your query to BOLD, you wait for some seconds for results. In this example BOLD returned the following window.

Example of results from a query to the BOLD identification engine. (Click on picture to expand)

The results window lists the top matches in terms of sequence similarity, and in this case we have 100 % similarity match with the crab Atelecyclus rotundatus. There is also an option to display the results as a TREE BASED IDENTIFICATION. When clicking on the option tab, the closest hits are clustered in a so-called Neighbour Joining Tree. In the window below you see parts of the tree where our unknown DNA-sequence has been joined to a group of other sequences in BOLD that have been deposited as Atelecyclus rotundatus barcodes by other biodiversity labs.

Part of TREE BASED IDENTIFICATION of an unknown DNA sequence (in red). We see that the unknown clusters with with other sequence of Atelecyclus rotundatus. The nearest neighbour branch is Atelecyclus undecimdentatus. (Click on picture to enlarge.)

The species page for Atelecyclus rotundatus gives us more information about this crab and about its records in BOLD.

Species page for the individual we identified with the BOLD identification engine. (Click picture to enlarge.)

If in fact your sequence was produced from an unknown crab, this identification seems convincing. But sometimes you should think twice about search results, and this will be the topic of a future blog post.

-Endre

Door #7: New shipment of tissue samples for barcoding

In the upper right corner is a “plate”: the microplates with 96 wells where we deposit small tissue samples that are to be processed at the CCDB lab in Canada for NorBOL

On the third day of Christmas,
we sent eleven microplates away:
one plate cnidarians (A)
two with worms a-wriggle (B)
two plates of insects (C)
three plates crustaceans (D)
two (and a half) plates of mites (E)
and a half-plate assorted a-arthropods (F)!

Ahem. Yes.

As Endre explained in the fifth post of the calendar, collecting, identifying, documenting and keeping specimens used for DNA barcoding is an important part of what we do here at the invertebrate collections. Our mission in the NORBOL consortium is to produce DNA-barcodes, particularly for marine fauna in Norwegian waters and to make these barcodes available with open access to records and metadata in the BOLD database. These samples contribute to the building of a validated reference library of the genetic barcodes of the species found in Norway. You can search for different taxonomic groups here to see if they have been barcoded from Norwegian territory: Search NorBOL

The process is fairly straight forward (at least on paper!): Animals are collected and identified. Those species relevant for barcoding are selected, and a specimen (=1 animal) is chosen to be barcoded. We take a small tissue sample from the specimen, and keep the rest of the animal as the barcode voucher; if the need should arise to check if it really is what we initially thought, it is crucial to be able to go back and check the animal again. The tissue samples are collected in wells on a plate like the one pictured above, and the information about the animals – where they were collected, who collected them, what species they are, who identified them and so on is uploaded to BOLD together with images of the animals.

Representatives for the tissue sample plates that we just shipped off. Thank you Steffen, Anna and Per for contributing the terrestrial animals and images! Photos: L. Martell, A. Seniczak, S. Roth, K. Kongshavn. Illustration: K. Kongshavn

On Monday we shipped a new batch of plates – as (attempted) illustrated in song above.

Included is material from several of the Norwegian Taxonomy Initiative projects (artsprosjekt) that are happening at the University Museum of Bergen. We are coordinating the efforts on marine life, but are of course also facilitating the NorBOL barcoding of other organisms that take place at the UMB.  There are animals from NorAmph (Norwegian Amphipoda), Hydrozoan pelagic diversity in Norway (HYPNO), Orbatid mites, and the insects found associated with nutrient rich marshes in Hedmark in this shipment.

We have also prepared several plates of Crustaceans collected and identified by the Norwegian marine mapping programme Mareano – one of the great contributors of material to the collections.

Now we wait for the lab to process them, and for the genetic sequences to be uploaded to BOLD – fingers crossed for many interesting results!

-Katrine

Door # 6: The key to the question

We often say that without knowing the species you examine, you really can’t know a lot about whatever it is you are examining. But how do you get from knowing for example “this is an amphipod” to knowing “this is Amphilochoides serratipes”?

Three different Amphilochidae from Iceland

Most researchers would usually stop at the “this is an amphipod”-stage, and many specialists  would call it a day at “this amphipod belongs to the familily Amphilochidae”. but then there are the one or two researchers who have gone on to specialise in this family (I think there are three of us in the world at the moment).

But finally – those days are over!
As a special gift on this Nicholaus-day when all German colleagues get a special gift from St Nicholaus (who is Father Christmas) we present to all of you – regardless of nationality or faith:

The interactive and illustrated key to the NorthEast Atlantic species of Amphilochidae

The key is a product of a collaboration between the NorAmph-project and the German-lead IceAGE project that examines benthic animals around Iceland, and the technical production and web-hosting of the key is from the Norwegian Taxonomy Initiative (Artsprosjekt) (who – we have to say – also have financed the NorAmph-project!) Hurrah for a great collaboration!

Figure 14 from Tandberg et al

You might still wonder what an Amphilochid amphipod is?

The family Amphilochidae are amphipods that are quite small (1-6mm in length) and quite stout. They are not extremely good swimmers, though much of that can be from their small size – and from their short appendages. They can be found all over the world, and are common at many depths in our cold waters. Even though they are small and easily overlooked, they sometimes occur in relatively large numbers, and can contribute significantly to both the biomass and diversity of a sample. They have been found on hydrothermal vents at the southern part of the Mid-Atlantic ridge, and some have been found as loose associates of other invertebrates.

Also – they are quite cute, don’t you think?  Good luck with the identification!

-Anne Helene

Literature:

Brix S et. al. 2018. Amphipod family distributions around Iceland. ZooKeys 731: 1-53. doi: 10.3897/zookeys.731.19854

Tandberg AHS, Vader W 2018. On a new species of Amphilochus from deep and cold Atlantic waters, with a note on the genus Amphilochopsis (Amphipoda, Gammaridea; Amphilochidae). ZooKeys 731: 103-134. doi: 10.3897/zookeys.731.19899

Door #5: DNA-barcoding with BOLD

Much of the activities in our invertebrate collections are dedicated to so-called DNA-barcoding. Our mission in the NORBOL consortium is to produce DNA-barcodes, particularly for marine fauna in Norwegian waters and to make these barcodes available with open access to records and metadata in Boldsystems.com. In the same manner we have also worked to produce DNA-barcodes for marine invertebrates on the West-African continental shelf in a project called we call MIWA.

These QR-codes will take you to maps with plots of specimens that have been barcoded in our projects (or simply click on them. The red dots on the maps are interactive):

QR-code to view our barcoding efforts in NORBOL

QR-code to view our barcoding in the MIWA project

The basic idea motivating these activities is very simple in principle. You collect specimens and identify them, preferably to species, take digital photographs, and upload information about collection site and other relevant data to a database (BOLDsystems.org).

The specimen page has a picture and other data about the organism that the DNA sequence (presumably) was produced from (click picture to enlarge).

You take a tissue sample to extract DNA from the specimen and use DNA-sequencing technology to target a special fragment of DNA to read the sequence of nucleotides. The expectation is that this sequence may be unique for the particular species you identified.  If indeed the expectation is fulfilled, you can use that sequence as an unambiguous identifier (“bar-code”) of that species.  You have produced a DNA-barcode!

A sequence page in BOLD contains the DNA-sequence (the barcode), the aminoacid translation of the sequence, and the trace-files from the DNA-sequencing machine.(Click picture to enlarge)

Your barcode should enter a DNA-barcode library so that, with an appropriate web-interface to a powerful computer with a search algorithm that compares similarities, you should be able to search with a second sequence from another individual of the same species and find that it is identical, or at least very similar to the one you produced for the DNA-barcode library.  The benefits are potentially many. One advantage is that you may be able to identify a species although all the morphological characteristics have been lost. For the biologist DNA-barcodes may help to identify juvenile stages of a species or even the stomach contents of a predator or scavenger. For conservation, customs, trade, and food authorities DNA barcodes are a powerful means to monitor resource exploitation and attempts to swindle with species identities or area of origin of  biological products.

A taxon window in BOLD fro the crab Atelecyclus undecimdentatus. (Click picture to enlarge)

DNA-barcoding certainly also contributes to the mapping of species distributions and to survey genetic characteristics of taxa. Perhaps initially somewhat unexpected, it also reveals many problems in taxonomy that call for resolution through closer studies. More about this will follow in other blog posts.

-Endre

Door #4: PSA: abstract submission for iBOL Conference is open!

For door #4 we are helping spread word about the 8th International Barcode of Life Conference, which will take place in Trondheim, Norway on June 17-20th next year.

Abstract submissions are open until January 15th 2019, so now is the time to start thinking (if you haven’t already).

The previous IBOL conference – the one in Kruger National Park, South Africa – was not just in an amazing location (which it undoubtedly was!), but covered a wide array of interesting topics and wonderful talks, and IBOL2019 is set to follow suit!

Check out the planned session themes and outstanding plenary speakers here.

The Norwegian participants at IBOL2017 – enthusiastic about launching Trondheim as the host for IBOL2019! Photo: Knut A. Hjelt

The University Museum in Bergen is one of the four University Museums that are coordinating the Norwegian Barcode of Life (NorBOL) project, and we will be presenting some of our findings on marine invertebrates at the conference  – hope to see you there!

You can find all the relevant information on the conference web page: http://dnabarcodes2019.org/

Door #3: Mollusc hunting around the world

The study of molluscs (malacology) has a long tradition in Norway. Despite the nearly 50,000 species dwelling in the world oceans and seas, a number only barely supersede by the arthropods, new species continue to be discovered and our understanding of the relationships and systematics of molluscs to change.

At the Natural History Museum of Bergen, the study of molluscs is focal, and research is carried out on various aspects of their diversity, morphology, ecology, systematics, evolution, and biogeography, using state of the art methods like DNA barcoding, molecular phylogenetics, and electron microscopy. Understanding the patterns and processes that drive present diversity in the oceans is one of our main goals and our research foci are framed within several “big questions”: How many and how can we differentiate between species? How do species originate in the oceans? Why some regions in the oceans are more diverse than others? Are mechanisms responsible for the patterns of diversity in the deep-sea the same as in shallow ecosystems?

Our quest for answers necessitate the continuous collection of new specimens and the exploration of remote geographies. We conduct regular fieldwork around the world including Norway, through numerous projects and partnerships.

Here are some snapshots from recent fieldwork from Manuel & team:

Working during October 2017 together with Professor João Macuio from the University Lurio (Pemba, Mozambique) in Nangata Bay (Nuarro, Mozambique) on a survey of the sea slug diversity inhabiting this pristine coral reef area and on an assessment of the structure and conservation status of the population of the threatened giant clam species (Tridacna maxima). Left image: Manuel Malaquias and João Macuio photographing sea slugs at the Nuarro Research Center.

João Macuio measuring underwater the total length of a specimen of the giant clam Tridacna maxima

Working in remote places requires often some capacity to improvise and during a fieldtrip to Taiwan while in the Penghu islands we had to convince the manager of our hostel to let us set up a field-lab in the garage among his gear and pet-cage!

Manuel and Trond Oskars, PhD candidate at the Museum, searching for molluscs during May 2017 at mangrove systems near the city of Kaohsiung, Taiwan

In the Penghu islands we had the opportunity to work in the field together with students from the National Penghu University of Science and Technology, here depicted in the right image helping collecting sea slugs along a water stream lined by few mangrove bushes.

After a three weeks fieldtrip to Vamizi island in the Quirimbas archipelago, north of Mozambique during May 2015, we were finally brought to shore at Palma village near the border with Tanzania where we had to do some final sorting and organization of samples under the curious eyes of the local villagers (Manuel Malaquias and Yara Tibiriça from the Zavora Marine Lab in Mozambique).

Fieldwork during May 2018 in the Oslo fjord as part of the project “Sea slugs of southern Norway” funded by Artsdatabanken. Left image: part of the team working through the catch of the day at the Tolboden Course Center in Drøbak, University of Oslo (left to right: Cessa Rauch, Manuel Malaquias, Torkild Bakken, Anders Schouw)

You can read more about some of these expeditions by exploring the posts found here (workshops) and here (fieldwork).

Manuel

Door #2: A glimpse of Hydrozoan anatomy

Hydroids and hydromedusae are abundant and widespread, but they can be difficult to identify, in part due to the overwhelming amount of terminology used to describe their polyps, colonies and medusae. The diversity of shapes and life cycle strategies in Hydrozoa is in fact so high that it is almost impossible to find a single set of descriptive terms for all species, and different glossaries have been developed for closely related families, sometimes genera, and also for the different stages in the life cycle of the same organism. To further complicate things, the terminology we use for the characterization of hydrozoan morphology has been adapted in many cases from other fields of science (like botany and geometry), and some of the words ended up with very different meanings depending of the organism we are looking at.

But if you are interested in these fascinating creatures, fear not! We at the invertebrate collections have thought about giving you a little visual aid in the form of four plates including some of the basic structures of hydroids and hydromedusa (courtesy of artsprosjekt HYPNO and upcoming artsprosjekt NORHYDRO).

Figure 1: Thecate polyps, like the ones of Aglaophenia harpago, are protected by rigid structures called “thecae” into which the polyp can retract. In many species they live all together forming colonies. Credit: Joan J. Soto Àngel and L. Martell.

Figure 2: Unlike their “protected” relatives, athecate polyps (e.g. those of Pennaria disticha) lack the skeletal protection of the theca, but can also form large colonies with many polyps. Credit: Joan J. Soto Àngel and L. Martell.

Figure 3: The hydromedusae produced by thecate polyps are called leptomedusae, and can be recognized by the development of gonads in the radial canals (among other characteristics). From left to right and top to bottom in the picture are three species present in Norwegian waters: Tiaropsis multicirrata, Modeeria rotunda, and Tima bairdii. Credit: L. Martell and A. Hosia, HYPNO project.

Figure 4: Anthomedusae (hydromedusae produced by athecate polyps) usually have the gonads developed in the manubrium. From left to right and top to bottom in the picture are Leuckartiara octona, Rathkea octopunctata, and Sarsia tubulosa. Credit: L. Martell and A. Hosia, HYPNO project.

Hopefully these images can be used as a starting point for the uninitiated, and why not? perhaps also as a source of inspiration for cool marine-related presents for the season!

-Luis Martell and Joan J. Soto Àngel