
Scientific publications: From leather bound tomes to printouts, taxonomic keys in frequent use, presentations and posters

Scientific publications: From leather bound tomes to printouts, taxonomic keys in frequent use, presentations and posters
The tropical western Atlantic and in particular the Caribbean is the second most diverse marine region in the World only outnumbered in species by the Indo-West Pacific. The processes that lead to this richness are not fully understood, but the diversity of habitats, the network of islands and cays, the uplift of the Isthmus of Panama, and the various periods of transient allopatry caused by sea level changes during the Plio-Pleistocene epochs have most likely played a role.

A Key deer (Odocoileus virginianus clavium). An endemic subspecies of the American white-tailed deer
At the Section for Natural History at the University Museum of Bergen we are investigating the causes and timing of marine diversification in the Caribbean using as model a cryptic species complex of a gastropod (the Bulla occidentalis species-complex). This project led us previously to sample in places like Brazil, Venezuela, Guadeloupe, Panama, the Bahamas, and Bermuda and benefited from samples from many other places collected and kindly provided by several colleagues.
A preliminary molecular phylogenetic analysis of the data have yielded intriguing results with specimens from the Florida Keys depicting an unexpected level of isolation hardly sharing any haplotypes with “conspecifics” from close by neighboring areas like the Florida Peninsula and Cuba. Nevertheless, the reduced number of specimens that we had available from the Florida Keys hampered any sound testing of this trend. Therefore, a fieldtrip to the Keys was organized between the 7–16 January 2015 in order to collect additional specimens from the local representative of the Bulla occidentalis species-complex.
The Florida Keys are an arc-shaped coral archipelago located off the southern coast of Florida, dividing the Atlantic Ocean to the east from the Gulf of Mexico to the west. The Keys form the southernmost portion of the continental United States; they begin at the southeastern coast of the Florida peninsula, about 24 km south of Miami, and extend in a arc to Key West, the southernmost of the inhabited islands, and on to the uninhabited Dry Tortugas, just 140 km from Cuba.
The base for the all operation was set at Mote Marine Tropical Laboratory in Summerland Key near the southern tip of the Keys. Pleasant accommodation with sea views, a lab equipped with microscopes and seawater on the tap, plus my little red Mazda rented at the Miami airport (by the way… for a week it became the smallest car to ride the roads of the Keys!) were the ingredients to what turn into a very successful fieldtrip.
The Keys stretch over 150 km and a great amount of time was spent finding and exploring good sampling sites. Those varied from mangrove areas with seagrass beds, sandy beaches with patches of seagrass and clumps of coral, to areas densely vegetated by mangroves, algae and seagrass. At the end two populations of Bulla occidentalis were found plus many other spectacular sea slugs. This material is now housed in our systematic collections and will help unraveling the “entrails” that underlie marine speciation and biogeography in the tropical western Atlantic.
Meet Ampharete undecima, a new species of polychaete (bristle worm) that we recently described:

One of the tools used when describing a new species is the electron microscope, which allows us to take very detailed photographs of the animals. Photo: K. Kongshavn
The species has been decribed based on material collected by the University of Bergen in the Nordic Seas in the 80s, and from samples collected by MAREANO in more recent years. It occurs in deep waters between 600 and 1650 meters depth, and has a broad distribution. The type specimen of the species is from a location that MAREANO sampled in 2009.
Alvestad T., Kongsrud J.A., and Kongshavn , K. (2014) Ampharete undecima, a new deep-sea ampharetid (Annelida, Polychaeta) from the Norwegian Sea . Memoirs of Museum Victoria 71:11-19 Open Access.
The lab is rather quiet today, compared with the frantic activity of last week – but there’s still plenty of work to do! We’ll catalog the identified material – several hundred entries – into our museum collections.
For NorBOL, a total of 250 polychaete specimens from 154 different species were selected for genetic barcoding, that’s pretty impressive! In addition, some of our participants selected material to loan with them, these will also in part become NorBOL-barcodes.
We’ll process these as quickly as we can, taking pictures, filling in the forms and taking tissue samples for analysis at the CCDB lab in Canada – fingers crossed for a high success rate on the sequencing!

Preparing drawings using a camera lucida on the stereo microscope
As mentioned previously we focused on the MAREANO-material, but supplemented with other samples – including those that we have collected ourselves. That meant that beauties like this one (picture below) could be examined in detail by an expert, and get properly identified before we send it off to become part of the BOLD-database.
Thank you to all our participants for a very productive and fun week!
Our lab is currently brimming with polychaetologists (those working with the polychaeta, the bristle worms), as we’re in the middle of this year’s PolyNor workshop (Polychaete diversity in the Norwegian Sea).
We have eleven participants (five nationalities) here, and all are working hard to assign names to animals, fill up our lists of material to be cataloged into the University Museum’s collections, accumulation data for their own research projects, and selecting material suitable for barcoding through the NORBOL-project.
The majority of the samples that we are working on have been collected through the MAREANO-programme, but we are supplementing with material collected around Bergen, closer to the coast and into the fjords, and material collected around Svalbard.
This week was dedicated to phylogenetics. In five intensive sessions on the computer lab, students were practising exercises using a range of different software packages. The main purpose with the course is to get some hands-on experience with the work-flow from phylogenetic data to phylogenetic trees and their interpretation. Course instructors were teachers and PhD-students associated with the Invertebrate Collections.
The course is also open for students in the internordic Research School in Bioinformatics run by four university museums in Norway: ForBio. In addition to students from UiB, this year we also had visitors from the Universities of Iceland, University of Copenhagen, Gothenburg University, University of Oulu, and the University of Salford, UK.
The past week we’ve been staying at “Biologen”, a research station in the city Drøbak. The station is run by the University of Oslo, and we’ve been making day trips with the research vessel Bjørn Føyn collecting marine invertebrates using a variety of gear. During three days we managed to sample 19 localities, some of which were “type localities” of specific species that we were after. A type locality is the site where the specimen that the species description is based on was collected. Whenever possible, we want to include genetic barcoding of a specimen collected at the type locality. We also collected “a bit of everything” for barcoding, as we don’t have a lot of material that is suitable for genetic work from this region.
During the second week of September (7-11.09.14) the 7th Congress of The European Malacological Societies were held at St. Catherine’s College of the University of Cambridge, UK.
The Colleges of Cambridge is a mashup of old venerable buildings and modern facilities, St. Catherine’s, founded in 1473, is no exception consisting of a brand new conference center and the main bulk of the college consisting of a quilt of buildings being pieced together since its founding, up to the 1900’s. The participants numbering around 150 researchers, converged on Cambridge from all around Europe, but also included travelers from more distant places like Vladivostok, Hong Kong and South Africa.
As the Congress was not the largest, all the presentations were held in the same Auditorium and each day had its own topic, everybody got to experience all the talks, opposed to running around to find the most interesting symposium, leading to the participants to sit and learn about interesting topics and studies they most likely would have missed out on. The small number of researchers also led to a more intimate atmosphere and many discussions with people from widely different malacological fields and academic levels.
The University Museum was represented by two posters, presented by Trond Oskars and Lena Ohnheiser. Trond presented the remaining part of his master thesis, with a poster on the molecular phylogeny of the non-monophyletic Philiinidae cephalaspid gastropods and Lena presented a poster on the status of the cephalaspids Cylichna alba as a species or a complex of species.

The Casino building of the Goethe University
Almost 300 researchers from many nations were convened last week at the beautiful Campus Westend of the Goethe–University in Frankfurt for the 8th International Crustacean Congress (ICC-8). Many interesting talks and high quality posters were presented over six days. A special workshop on DNA-identification and barcoding filled the auditorium to the the edge and left many attendants standing through the session. EW gave a 15 minutes talk on results from our barcoding of decapods and stomatopods. He particularly emphasized how barcoding can reveal discordant species identifications among different labs and research environments and pinpoint the need for reidentification and / or taxonomic revision of species.
Kenneth Meland (BIO, UiB) presented results from phylogenetic analyses of the ancient group Lophogastrida. Separate analyses of morphological characters and DNA from four genes show surprisingly congruent results and have given us a new understanding of relations among the families of the group. Meland cooperates with EW and Stefan Richter (Univ. Rostock) in this project.

We’re currently busy with a workshop on Marine Invertebrates of West Africa , look here for news on that: